View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_22 (Length: 492)
Name: NF0925_low_22
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 138 - 479
Target Start/End: Original strand, 5751305 - 5751659
Alignment:
| Q |
138 |
gacaaaaattagttaagggtcatagagttaaaggtcttgagttgaagttctagaaaagagnnnnnnnnnntaacataacaactaacatatatcattcnnn |
237 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5751305 |
gacaaaaattagttaagagtcatagagttaaaggtcttgagttgaagttctagaaaagagaaaaaaaaa-taacataacaactaacatatatcattcaaa |
5751403 |
T |
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| Q |
238 |
nnnnnnnnnn-------gaaactaggatataattaaaataactttctaagggtataagaatcatacata---aataaattaaatataa-ctcaagatgtc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
5751404 |
aataaaaaagaaaaaaagaaactaggatataattaaaataactttctaagggtataagaatcatacatattaaataaattaaatataaactcaagatgtc |
5751503 |
T |
|
| Q |
327 |
cttaacactgcacatagctcaccaagagaattaaaaattaggacaaaaacattcacacaccatactaaaactacctatattattggaaggtt---tggta |
423 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5751504 |
cttaacaatgcacatagctcaccaagagaattaaaaattaggacaaaaacattcacacaccatactaaaactacctatattattggaaggtttggtggta |
5751603 |
T |
|
| Q |
424 |
tgcccaataacaacttcttccactagcacctaggtacctattaatccaacatcttc |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5751604 |
tgcccaataacaacttcttccactagcacctaggtacctattaatccaacatcttc |
5751659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 138 - 479
Target Start/End: Original strand, 18681343 - 18681697
Alignment:
| Q |
138 |
gacaaaaattagttaagggtcatagagttaaaggtcttgagttgaagttctagaaaagagnnnnnnnnnntaacataacaactaacatatatcattcnnn |
237 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18681343 |
gacaaaaattagttaagagtcatagagttaaaggtcttgagttgaagttctagaaaagagaaaaaaaaa-taacataacaactaacatatatcattcaaa |
18681441 |
T |
|
| Q |
238 |
nnnnnnnnnn-------gaaactaggatataattaaaataactttctaagggtataagaatcatacata---aataaattaaatataa-ctcaagatgtc |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
18681442 |
aataaaaaagaaaaaaagaaactaggatataattaaaataactttctaagggtataagaatcatacatattaaataaattaaatataaactcaagatgtc |
18681541 |
T |
|
| Q |
327 |
cttaacactgcacatagctcaccaagagaattaaaaattaggacaaaaacattcacacaccatactaaaactacctatattattggaaggtt---tggta |
423 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18681542 |
cttaacaatgcacatagctcaccaagagaattaaaaattaggacaaaaacattcacacaccatactaaaactacctatattattggaaggtttggtggta |
18681641 |
T |
|
| Q |
424 |
tgcccaataacaacttcttccactagcacctaggtacctattaatccaacatcttc |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18681642 |
tgcccaataacaacttcttccactagcacctaggtacctattaatccaacatcttc |
18681697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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