View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0925_low_23 (Length: 485)
Name: NF0925_low_23
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 46359298 - 46359642
Alignment:
| Q |
19 |
gcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaagaagcctatgctctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359298 |
gcttcatccagaaaccatccttcctgatgacggcgagatacttggggacgtgttgtattgcttttttaaaagaaatatgattaaagaagcctatgctctc |
46359397 |
T |
|
| Q |
119 |
tttctggctgcaaatgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatgctatgtttnnnnn |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359398 |
tttctggctgcaaatgagagacgctaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatgctatgtttaaaaa |
46359497 |
T |
|
| Q |
219 |
nngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtggacgaccgggaaaaattgtttaaactcatgctctttacacatgtttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359498 |
aagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgtttt |
46359597 |
T |
|
| Q |
319 |
cggagccttcaatatacgatatcagtataattattactgcctatg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359598 |
cggagccttcaatatacgatatcagtataattattactgcctatg |
46359642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 44460428 - 44460736
Alignment:
| Q |
19 |
gcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaagaagcctatgctctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44460428 |
gcttcatccagaaaccatccttcctgatgacggcgagatacttggggacgtgttgtattgcttttttaaaagaaatatgattaaagaagcctatgctctc |
44460527 |
T |
|
| Q |
119 |
tttctggctgcaaatgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatgctatgtttnnnnn |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44460528 |
tttctggctgcaaatgagagacgcaaaacaaacccaaactggccgctgaagttaagaatgttgttaccacttaatatgatccaaatgctatgtttaaaaa |
44460627 |
T |
|
| Q |
219 |
nngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtggacgaccgggaaaaattgtttaaactcatgctctttacacatgtttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44460628 |
aagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgtttt |
44460727 |
T |
|
| Q |
319 |
cggagcctt |
327 |
Q |
| |
|
||||||||| |
|
|
| T |
44460728 |
cggagcctt |
44460736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 44467961 - 44468269
Alignment:
| Q |
19 |
gcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaagaagcctatgctctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44467961 |
gcttcatccagaaaccatccttcctgatgacggcgagatacttggggacgtgttgtattgcttttttaaaagaaatatgattaaagaagcctatgctctc |
44468060 |
T |
|
| Q |
119 |
tttctggctgcaaatgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatgctatgtttnnnnn |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44468061 |
tttctggctgcaaatgagagacgcaaaacaaacccaaactggccgctgaagttaagaatgttgttaccacttaatatgatccaaatgctatgtttaaaaa |
44468160 |
T |
|
| Q |
219 |
nngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtggacgaccgggaaaaattgtttaaactcatgctctttacacatgtttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44468161 |
aagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgtttt |
44468260 |
T |
|
| Q |
319 |
cggagcctt |
327 |
Q |
| |
|
||||||||| |
|
|
| T |
44468261 |
cggagcctt |
44468269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 91 - 266
Target Start/End: Complemental strand, 34502181 - 34502006
Alignment:
| Q |
91 |
aaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttgttaccactt |
190 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||| |||||| | |
|
|
| T |
34502181 |
aaatatgattaaagaagcctatgctctctatatggctgcaaatgagaaacgcaaaacaaacccaaactggtcgctgaagttaaaaatgttattaccattg |
34502082 |
T |
|
| Q |
191 |
aatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgagg |
266 |
Q |
| |
|
|||| ||||||||| || ||||| ||||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
34502081 |
aatacgatcaaaatactttgtttaagaaaggaaacggtacatctggctttggagatgttgaatgatatccctgagg |
34502006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 34501880 - 34501841
Alignment:
| Q |
324 |
ccttcaatatacgatatcagtataattattactgcctatg |
363 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34501880 |
ccttcaatatatgatatcagtataattattactgcctatg |
34501841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 363
Target Start/End: Original strand, 44460804 - 44460843
Alignment:
| Q |
324 |
ccttcaatatacgatatcagtataattattactgcctatg |
363 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44460804 |
ccttcaatatatgatatcagtataattattactgcctatg |
44460843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 363
Target Start/End: Original strand, 44468337 - 44468376
Alignment:
| Q |
324 |
ccttcaatatacgatatcagtataattattactgcctatg |
363 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44468337 |
ccttcaatatatgatatcagtataattattactgcctatg |
44468376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 38604983 - 38604846
Alignment:
| Q |
19 |
gcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaagaagcctatgctctc |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || || ||| |||||| | | ||| ||| | || ||||| ||||||||||||||||| |||||| || |
|
|
| T |
38604983 |
gcttcatccagaaaccctccttcctgatgatggtgaaataattggtgtcttgttagtttggtcttctaaaaataatatgattaaagaagcatatgctatc |
38604884 |
T |
|
| Q |
119 |
tttctggctgcaaatgagagacgcaaaacaaacccaaa |
156 |
Q |
| |
|
| |||||||||||| |||| ||| |||||||| ||||| |
|
|
| T |
38604883 |
tatctggctgcaaaggagaaacggaaaacaaatccaaa |
38604846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 40180481 - 40180344
Alignment:
| Q |
19 |
gcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaagaagcctatgctctc |
118 |
Q |
| |
|
|||||| ||||| || ||||||||||||| || ||||||||||| | | ||| ||| |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
40180481 |
gcttcaaccagatactctccttcctgatgatggtaagatacttggtcgcttgttaacttggttttctaaaaataatatgattaaagaagcctatgctctc |
40180382 |
T |
|
| Q |
119 |
tttctggctgcaaatgagagacgcaaaacaaacccaaa |
156 |
Q |
| |
|
| || ||| |||||||||| ||| |||| ||||||||| |
|
|
| T |
40180381 |
tatcgggcagcaaatgagaaacggaaaagaaacccaaa |
40180344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 514 times since January 2019
Visitors: 6696