View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_29 (Length: 472)
Name: NF0925_low_29
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 110 - 467
Target Start/End: Original strand, 32643566 - 32643923
Alignment:
| Q |
110 |
ggcttgaaaaagttgggtaccataaccttgtctcaaaagtaacagttctacaaggcactgttatcaatgctcttgtgaatgaagctataacatgcttgca |
209 |
Q |
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| T |
32643566 |
ggcttgaaaaagttgggtaccataaccttgtctcaaaagtaacacttctacaaggcactgttatcaatgctcttgtgaatgaagctgtaacttgcttgca |
32643665 |
T |
|
| Q |
210 |
aattttgggaaaggatgaacctgccatcccaattgggggtggattgcccttgactacaaggctcgtgaaaaaggacatctctcttcagatgttcatcttg |
309 |
Q |
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| T |
32643666 |
aattttgggaaaggatgaacctgccatcccaattgggggtggattgcccttgaccacaaggctcgtgaaaaaggacatctctcttcagatgttcatcttg |
32643765 |
T |
|
| Q |
310 |
aaacggtacacggcaataaccggcataaaaaatgttctaaataacacatgcactcgaatttttaatgatgttttgcagatagttttgaaaagcaaaatta |
409 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643766 |
aaaaggcacacggcaataaccggcataaaaaatgttctaaataacacatgcactcgaatttttaatgatgttttgcagatagttttgaaaagcaaaatta |
32643865 |
T |
|
| Q |
410 |
tgattgcaacacgaggtaccacatcacgaattcacacactcaatatgcctttgcttct |
467 |
Q |
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| T |
32643866 |
tgattgcaacacgaggtaccacatcacgaattcacacactcaatatgcctttggttct |
32643923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
| Q |
64 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
104 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
| Q |
64 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
104 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaaca |
46424194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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