View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_3 (Length: 753)
Name: NF0925_low_3
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 646; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 9 - 724
Target Start/End: Original strand, 21850790 - 21851502
Alignment:
| Q |
9 |
agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagcaaacatggtggtttgcaggttgtgtcatagg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21850790 |
agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagcaaacatggtggtttgcaggttgtgtcatagg |
21850889 |
T |
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| Q |
109 |
agtgatataagggtccctagatttgtctcatgaaacataagtgatcttgggaaatgaccgcctcccaggtatgccaccctaaccaagtgaagttgaagct |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21850890 |
agtgatataagggtccctagatttgtctcatgaaacataagtgatcttggggaatgaccgcctcccaggtatgccaccctaaccaagtgaagttgaagct |
21850989 |
T |
|
| Q |
209 |
gaattggggaatgacatcctcccaatgtcagaagacttcgtaagatctgaggtatcatgagacacaagtttgatggggattatttccttagaaacaatgt |
308 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21850990 |
gaattggggaatgacatcatcccaatgtcagaagacttcgtaagatctgaggtatcatgagacacaagtttgatggggattatttccttagaaacaatgt |
21851089 |
T |
|
| Q |
309 |
cctttaacctagtgttatgaatcaaagaaacttcttcaccataatgagcattgagtggctcaatatcagctaaaagcttgttaaaagagccatcaatatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21851090 |
cctttaacctagtgttatgaatcaaagaaacttcttcaccataatgagcattgagtggctcaatatcagctaaaagcttgttaaaagagccatcaatatc |
21851189 |
T |
|
| Q |
409 |
tttcatatcatcaaccaaagcctctccttgcaccgtgtcaggttcagaattcaaaatggtgaaataattgtgcaggacaggatcttggtcttccaagaaa |
508 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
21851190 |
tttcat---atcaaccaaagcctctccttgcaccctgtcaggttcagaattcaaaatggtgaaataattgtgcaggacaagatcttggtcttccaagcaa |
21851286 |
T |
|
| Q |
509 |
tcatgtcctctaaactaaagttagcagggtcatatcgaatgttgtccataacattaaaagtagcatcactagctaggaaaagaggtatggtgtgaactat |
608 |
Q |
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|| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
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| T |
21851287 |
tcctgtcctctaaactaaagttcgcatggtcatatcgattgttgtccataacattaaaagaaacatcactagctaggaaaagaggtatggtttgaactat |
21851386 |
T |
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| Q |
609 |
cagctgcaacaatgatggaaaaaggtgcatgcggaacagtttccgctggatcttcacaggtatttatttgtaatgtagtctctaaatttgctatctaata |
708 |
Q |
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| T |
21851387 |
cagctgcaacaatgatggaaaaaggtgcatgcggaacagtttcagctggatcttcacaggtatttatttgtaatgtagtctctaaatttgctatctaaga |
21851486 |
T |
|
| Q |
709 |
tctatttggtgcatct |
724 |
Q |
| |
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|||||||||||||||| |
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| T |
21851487 |
tctatttggtgcatct |
21851502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 31163375 - 31163444
Alignment:
| Q |
9 |
agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagca |
78 |
Q |
| |
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|||||| |||||||| |||||| ||| || ||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
31163375 |
agcagaaaggggtttagaagcaggaaccaaggtttggtttgaagggagcttgtcacttgtcaaactagca |
31163444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 51524691 - 51524634
Alignment:
| Q |
18 |
gggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaacta |
75 |
Q |
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|||||||||| |||||| || | ||||||||||| |||| |||||||||||||||||| |
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| T |
51524691 |
gggtttggaaacatgaaccaagatttggcttgaagggagcttgtcacttgtcaaacta |
51524634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 22970514 - 22970561
Alignment:
| Q |
200 |
gttgaagctgaattggggaatgacatcctcccaatgtcagaagacttc |
247 |
Q |
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| T |
22970514 |
gttgaagctgaactggggaatgacaccctcccagtgtcagaaaacttc |
22970561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 39332187 - 39332106
Alignment:
| Q |
9 |
agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagcaaacatggtggtt |
90 |
Q |
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|||||| ||||||||||||||| | |||| ||||||||||||| |||| |||||||| | || |||||||| |||||||| |
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| T |
39332187 |
agcagaaaggggtttggaagcagggatcaaggtttggcttgaagggagcttgtcactagataagctagcaaatctggtggtt |
39332106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 41035308 - 41035342
Alignment:
| Q |
41 |
tttggcttgaacggagtttgtcacttgtcaaacta |
75 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
41035308 |
tttggcttgaagggagtttgtcacttgtcaaacta |
41035342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 8831556 - 8831593
Alignment:
| Q |
41 |
tttggcttgaacggagtttgtcacttgtcaaactagca |
78 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||| |
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| T |
8831556 |
tttggcttgaagggagcttgtcacttgtcaaactagca |
8831593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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