View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_31 (Length: 468)
Name: NF0925_low_31
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 30 - 458
Target Start/End: Complemental strand, 45712915 - 45712487
Alignment:
| Q |
30 |
ccaaatgaggcactacctagaatttcagcagacgcctttagcaaatcctgtaaatcaaacgttattccatcctgcctaaggaatataagcttgccttgtt |
129 |
Q |
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| T |
45712915 |
ccaaatgaggcactacctagaatttcagcagacgcctttagcaaatcctgtaaatcaaacgttattccatcctgcctaaggaatataagcttgccttgtt |
45712816 |
T |
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| Q |
130 |
ccccctttttggaatgtccatgactgtggcgatcatgcttaggactttcgggatcataatgttcggccaagcttttggttttcacataaactacaggagg |
229 |
Q |
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| T |
45712815 |
ccccctttttggaatgtccatgactgtggcgatcatgcttaggactttcgggatcataatgttcggccaagcttttggttttcacataaactacaggagg |
45712716 |
T |
|
| Q |
230 |
cttaacatattttttggaggcctgcgcatggaatgttgaaatcatagaagaatggtgttcatcatctaactgcttcttctgggacctcaaacgaaagatg |
329 |
Q |
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| T |
45712715 |
cttaacatattttttggaggcctgcgcatggaatgttgaaatcatagaagaatggtgttcatcatctaactgcttcttctgggacttcaaacgaaagatg |
45712616 |
T |
|
| Q |
330 |
acaaatattgaaaccacaatgactactaaaaatgctattgaaatcacaataagtgatgttttcataatgagtagattggatagagtaccagtctcctttc |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
45712615 |
acaaatattgaaaccacaatgactactaaaaatgctattgaaatcacaataagtgatgttttcataacgagcagattggatagagtaccagtctcctttc |
45712516 |
T |
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| Q |
430 |
ctgctgcaggtaattgacattgattcatc |
458 |
Q |
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| T |
45712515 |
ctgctgcaggtaattgacattgattcatc |
45712487 |
T |
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