View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_32 (Length: 466)
Name: NF0925_low_32
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 31603810 - 31603393
Alignment:
| Q |
9 |
agcataggtatttctcagttggtttcaaaggtatgctgcatcgcatggtagtcgcaggggactccaaacccctactcacgtctaatatgtatacgatatc |
108 |
Q |
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| T |
31603810 |
agcataggtatttctcagttggtttcaaaggtatgctgcatcgcatggtagtcgtaggggactccaaacccctactcacgtctaatatgtatacgatatc |
31603711 |
T |
|
| Q |
109 |
atgattttttgcaaaggtaaacgaggtttgatatagcttgtgaaccattataggagggcatggcgaatgctctggcaaattgattagctttgataaatca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31603710 |
atgattttttgcaaaggtaaacgaggtttgatatagcccgtgaaccattataggagggcatggcgaatgctctggcaaattgattagctttgacaaatca |
31603611 |
T |
|
| Q |
209 |
aaatcttattctcgaatacactgggaattcactgctggtactctatcatttatccataatgggaaggattcagttagtcaagtctgtcattcatggtatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603610 |
aaatcttattctcgaatacactgggaattcactgctggtactctatcatttatccataatgggaaggattcagttagtcaagtctgtcattcatggtatg |
31603511 |
T |
|
| Q |
309 |
cttatttttagttttgaaataaatgtgaggtcaatttctttgattgaattgctagatcattatctgcgaaactttgtttggtcgggagatgtccactcca |
408 |
Q |
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| T |
31603510 |
cttatttgtagttttgaaataaatgtgaggtcaatttctttgattgaattgctagatcattatctgcgaaactttgtttggtcgggagatgtccactcca |
31603411 |
T |
|
| Q |
409 |
gactgatctactgttgct |
426 |
Q |
| |
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| T |
31603410 |
gactgatctactgttgct |
31603393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 415
Target Start/End: Complemental strand, 31606064 - 31605861
Alignment:
| Q |
223 |
aatacactgggaattcactgctggtactct----atcatttatccataatgggaaggattcagttagtcaagtctgtcattcatggtatgcttattttta |
318 |
Q |
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||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||| || ||||||||||||||| |||||||||||||||||| || |
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| T |
31606064 |
aatacactgggaatttactgccggtactctccctatcatttatccataactggaaggactcgattagtcaagtctgtc-ttcatggtatgcttatttgta |
31605966 |
T |
|
| Q |
319 |
gttttgaaataaatgtgagg--------tcaatttctttgattgaattgctagatcattatctgcgaaactttgtttggtcgggagatgtccactccaga |
410 |
Q |
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||||| ||||||||||| | |||||||||||||||||||||| | |||||| |||| |||| | ||||||| ||||||||| | |||||| |
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| T |
31605965 |
gttttaaaataaatgtgtagccaatttcccaatttctttgattgaattgctggttcattacctgcaaaacctattttggtcaggagatgtcaattccaga |
31605866 |
T |
|
| Q |
411 |
ctgat |
415 |
Q |
| |
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|||| |
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| T |
31605865 |
ttgat |
31605861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 31606171 - 31606101
Alignment:
| Q |
149 |
tgaaccattataggagggcatggcgaatgctctggcaaattgattagctttgataaatcaaaatcttattct |
220 |
Q |
| |
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||||||||| ||||||| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
31606171 |
tgaaccattttaggagg-catggtgaatgctctggctaattgattagctttgacaaatcaaaatcttattct |
31606101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 31606247 - 31606219
Alignment:
| Q |
16 |
gtatttctcagttggtttcaaaggtatgc |
44 |
Q |
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| T |
31606247 |
gtatttctcagttggtttcaaaggtatgc |
31606219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 9453007 - 9452967
Alignment:
| Q |
420 |
tgttgctcttttaagatgaagcggtgaattcattaagtata |
460 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |||| |
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| T |
9453007 |
tgttgctcttttaagatgaagcggtaaattcattaaatata |
9452967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 46424194 - 46424154
Alignment:
| Q |
420 |
tgttgctcttttaagatgaagcggtgaattcattaagtata |
460 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||| |
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| T |
46424194 |
tgttgctcttttaagatgaagcgatgaattcattaaatata |
46424154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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