View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_34 (Length: 463)

Name: NF0925_low_34
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_34
NF0925_low_34
[»] chr5 (2 HSPs)
chr5 (28-240)||(39751787-39751999)
chr5 (241-453)||(39751346-39751560)
[»] chr3 (8 HSPs)
chr3 (28-225)||(21743223-21743420)
chr3 (28-225)||(22132025-22132222)
chr3 (28-225)||(21961355-21961552)
chr3 (28-225)||(18948581-18948778)
chr3 (309-448)||(21743772-21743911)
chr3 (309-448)||(21961937-21962076)
chr3 (309-391)||(22135787-22135869)
chr3 (309-368)||(18956962-18957021)
[»] chr7 (1 HSPs)
chr7 (243-278)||(7516160-7516195)
[»] chr2 (1 HSPs)
chr2 (251-280)||(34552859-34552888)
[»] chr6 (1 HSPs)
chr6 (241-273)||(14415538-14415570)
[»] chr1 (1 HSPs)
chr1 (240-280)||(45231905-45231945)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 39751999 - 39751787
Alignment:
Q  28 cagttattgcggctgcaaaggcgattgtcgcgataagagttgctactaacatacaagagtttgatgtatccttcatccaatttttcccttcttcaagcaa 127  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39751999 cagttattgcggctgcaaaggcgattgtcgcaataagagttgctactaacatacaagagtttgatgtatccttcatccaatttttcccttcttcaagcaa 39751900  T
Q  128 tgctttatgttcttccttgaacacttgccatgctgttttaccttcttggtttttaacttctttatggagagggtgatccaatttctctacttcctgttgg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39751899 tgctttatgttcttccttgaacacttgccatgctgttttaccttcttggtttttaacttctttatggagagggtgatccaatttctctacttcctgttgg 39751800  T
Q  228 tgatatagctatg 240  Q
    |||||||| ||||    
T  39751799 tgatatagttatg 39751787  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 241 - 453
Target Start/End: Complemental strand, 39751560 - 39751346
Alignment:
Q  241 ataaatgacatgtttgaaactttaaattaagttgaaggacatggtat----ttctt--ttcttggaactttacgtaaaaatgactaagaatgtacttatg 334  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||||    |||||  ||  ||||| || |||||||||| ||||||    || ||| |    
T  39751560 ataaatgacctgtttgaaactctaaattaagttgaagtacatggtatacttttcttcctttctggaatttaacgtaaaaattactaag----tagttaag 39751465  T
Q  335 atattaagttaaacaaaccttaaaccactttaactctctttgcatttgaaatgctgcacctgaaattgactctacttgagaagcaaaccttgctgccata 434  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |    
T  39751464 agattaagttaaacaaaccttaaaccactgtaactctctttgcatttgaaatgctgaacctgaaattgactctacttgagaagccaaccttgcggccaga 39751365  T
Q  435 tgtgatgtagtgttctgtg 453  Q
    |||||||||||||||||||    
T  39751364 tgtgatgtagtgttctgtg 39751346  T

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Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 21743223 - 21743420
Alignment:
Q  28 cagttattgcggctgcaaaggcgattgtcgcgataagagttgctactaacatacaagagtttgatgtatccttcatccaatttttcccttcttcaagcaa 127  Q
    |||| ||||| || ||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21743223 cagtaattgcagccgcaaaggtgattgttgcaataagagttgccactaacatacaagagtttgatgtatccttcatccaatttttcccttcttctagcaa 21743322  T
Q  128 tgctttatgttcttccttgaacacttgccatgctgttttaccttcttggtttttaacttctttatggagagggtgatccaatttctctacttcctgtt 225  Q
    ||  ||||| ||||||||||| |||||||| ||||||||||| || | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  21743323 tgtcttatgctcttccttgaaaacttgccaagctgttttaccatcgttgttcttaacgtctttatggagagggtggtccaatttctctacttcctgtt 21743420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 22132025 - 22132222
Alignment:
Q  28 cagttattgcggctgcaaaggcgattgtcgcgataagagttgctactaacatacaagagtttgatgtatccttcatccaatttttcccttcttcaagcaa 127  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||| ||||||| ||||||| |||||||| ||||||||||||| |||    
T  22132025 cagttattgcggccgcaaaggtgattgtcgcaataagagttgccactaacatacaagcgtttgatctatcctttatccaattattcccttcttcaaccaa 22132124  T
Q  128 tgctttatgttcttccttgaacacttgccatgctgttttaccttcttggtttttaacttctttatggagagggtgatccaatttctctacttcctgtt 225  Q
    || ||||||||||||  ||||||||| ||  ||||||||||| | || |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22132125 tggtttatgttcttcaatgaacacttcccgagctgttttaccatttttgtttttaactactttatggagagggtgatccaatttctctacttcctgtt 22132222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 21961355 - 21961552
Alignment:
Q  28 cagttattgcggctgcaaaggcgattgtcgcgataagagttgctactaacatacaagagtttgatgtatccttcatccaatttttcccttcttcaagcaa 127  Q
    |||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||| ||||||| | |||||| ||||||||||||| |||    
T  21961355 cagttattgcagctgcaaaggtgattgtcgcaataagagttgccactaacatacaagcgtttgatctatcctttacccaattattcccttcttcaaccaa 21961454  T
Q  128 tgctttatgttcttccttgaacacttgccatgctgttttaccttcttggtttttaacttctttatggagagggtgatccaatttctctacttcctgtt 225  Q
    |  ||||||||||||  ||||||||| ||  ||||||||||| ||   ||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  21961455 ttgtttatgttcttcaatgaacacttcccgggctgttttaccatcgctgttcttaacgtctttatggagagggtggtccaatttctctacttcctgtt 21961552  T

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Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 18948778 - 18948581
Alignment:
Q  28 cagttattgcggctgcaaaggcgattgtcgcgataagagttgctactaacatacaagagtttgatgtatccttcatccaatttttcccttcttcaagcaa 127  Q
    |||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||  ||||||| ||||| | |||||||| ||||||||||||| ||     
T  18948778 cagttattgcagctgcaaaggtgattgtcgcaataagagttgccactaacatacaaccgtttgatctatcccttatccaattattcccttcttcaaccat 18948679  T
Q  128 tgctttatgttcttccttgaacacttgccatgctgttttaccttcttggtttttaacttctttatggagagggtgatccaatttctctacttcctgtt 225  Q
    || ||||||||||||  |||||||||  |  ||||||||||| | || |||||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  18948678 tggtttatgttcttcaatgaacacttctcgggctgttttaccatttttgtttttaactactttatggaaagggtgattcaatttctctacttcctgtt 18948581  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 309 - 448
Target Start/End: Original strand, 21743772 - 21743911
Alignment:
Q  309 taaaaatgactaagaatgtacttatgatattaagttaaacaaaccttaaaccactttaactctctttgcatttgaaatgctgcacctgaaattgactcta 408  Q
    ||||||| || |||||||| ||||||| ||||| ||||||||||||||||||| | ||||||||||| |||||||||||| |||| || |||||| ||      
T  21743772 taaaaattacaaagaatgtgcttatgagattaaattaaacaaaccttaaaccaatgtaactctcttttcatttgaaatgcagcacatgcaattgattcag 21743871  T
Q  409 cttgagaagcaaaccttgctgccatatgtgatgtagtgtt 448  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  21743872 cttgagaagcaacccttgctgccagatgtgatgtagtgtt 21743911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 448
Target Start/End: Original strand, 21961937 - 21962076
Alignment:
Q  309 taaaaatgactaagaatgtacttatgatattaagttaaacaaaccttaaaccactttaactctctttgcatttgaaatgctgcacctgaaattgactcta 408  Q
    ||||||| | |||||| |||||||||| ||||| |||||||||||| |||||||| |||||||||||  | |||||||||||| ||| || |||| | ||    
T  21961937 taaaaattaataagaaagtacttatgagattaaattaaacaaacctgaaaccactgtaactctctttcaacttgaaatgctgcgcctaaagttga-ttta 21962035  T
Q  409 ct-tgagaagcaaaccttgctgccatatgtgatgtagtgtt 448  Q
     | | ||||| ||||||||||||||  || |||||||||||    
T  21962036 ttgttagaagaaaaccttgctgccaggtgcgatgtagtgtt 21962076  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 22135787 - 22135869
Alignment:
Q  309 taaaaatgactaagaatgtacttatgatattaagttaaacaaaccttaaaccactttaactctctttgcatttgaaatgctgc 391  Q
    ||||||| | |||||| |||||||||| ||||| |||||||||||| || ||||| | |||||||||  | ||||||||||||    
T  22135787 taaaaattaataagaaagtacttatgagattaaattaaacaaacctgaagccactgtgactctctttcaacttgaaatgctgc 22135869  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 18957021 - 18956962
Alignment:
Q  309 taaaaatgactaagaatgtacttatgatattaagttaaacaaaccttaaaccactttaac 368  Q
    ||||||| ||||||||||||| ||||  ||||| |||||||||||| |||||||| ||||    
T  18957021 taaaaattactaagaatgtacatatgggattaaattaaacaaacctcaaaccactgtaac 18956962  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 278
Target Start/End: Complemental strand, 7516195 - 7516160
Alignment:
Q  243 aaatgacatgtttgaaactttaaattaagttgaagg 278  Q
    ||||||| ||||||||||||||||||||||||||||    
T  7516195 aaatgacctgtttgaaactttaaattaagttgaagg 7516160  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 34552888 - 34552859
Alignment:
Q  251 tgtttgaaactttaaattaagttgaaggac 280  Q
    ||||||||||||||||||||||||||||||    
T  34552888 tgtttgaaactttaaattaagttgaaggac 34552859  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 14415538 - 14415570
Alignment:
Q  241 ataaatgacatgtttgaaactttaaattaagtt 273  Q
    |||||||| ||||||||||||||||||||||||    
T  14415538 ataaatgatatgtttgaaactttaaattaagtt 14415570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 45231945 - 45231905
Alignment:
Q  240 gataaatgacatgtttgaaactttaaattaagttgaaggac 280  Q
    |||||| ||| ||||||||||||||||||||||| ||||||    
T  45231945 gataaaagacgtgtttgaaactttaaattaagttaaaggac 45231905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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