View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_36 (Length: 462)
Name: NF0925_low_36
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 13235199 - 13235259
Alignment:
| Q |
305 |
acattattccaaattaaaataatccaagattttaatctcgtttcaaatatataatgtagta |
365 |
Q |
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| T |
13235199 |
acattattccaaattaaaataatccaagattttaatctcgtttgaaaaatataatgtagta |
13235259 |
T |
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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 27822243 - 27822325
Alignment:
| Q |
81 |
aatattattgattaaataaaa----taagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccctaat |
159 |
Q |
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| T |
27822243 |
aatattattgattgaataaaagatataagttgcctattaggttacaactgttaagcttaaatagggaaataacaaactctaat |
27822325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 8050021 - 8050069
Alignment:
| Q |
112 |
cttaggttacaacaattaagtttaaatagggaagtaacaaaccctaata |
160 |
Q |
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| T |
8050021 |
cttaggctacaactgttaagcttaaatagggaaataacaaaccctaata |
8050069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 4888810 - 4888892
Alignment:
| Q |
81 |
aatattattgattaaataaaa----taagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccctaat |
159 |
Q |
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| T |
4888810 |
aatattattgattgaataaaagttataagttgtctcttaggatacaactgttaagcttaaatagggaaataacaaactctaat |
4888892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 30217778 - 30217696
Alignment:
| Q |
81 |
aatattattgattaaataaaa----taagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccctaat |
159 |
Q |
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| T |
30217778 |
aatattattgattgaataaaagttataagttgtcttttaggttacaactgttaagcttaaacagggaaataacaaaccctaat |
30217696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 6451893 - 6451945
Alignment:
| Q |
103 |
aagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccc |
155 |
Q |
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| T |
6451893 |
aagttgtctcttaggctacaactgttaagtttaaatagggaaataacaaaccc |
6451945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 32162094 - 32162154
Alignment:
| Q |
81 |
aatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaa |
144 |
Q |
| |
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| T |
32162094 |
aatattattgaataaataaaa---gctgcctcttacgttacaactattaagtttaaatagggaa |
32162154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 36647232 - 36647180
Alignment:
| Q |
107 |
tgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccctaat |
159 |
Q |
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| T |
36647232 |
tgcctcttaggttacatctgttaagcttaaataggaaaataacaaaccctaat |
36647180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 24730952 - 24730920
Alignment:
| Q |
127 |
ttaagtttaaatagggaagtaacaaaccctaat |
159 |
Q |
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| T |
24730952 |
ttaagtttaaatagggaaataacaaaccctaat |
24730920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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