View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_39 (Length: 448)
Name: NF0925_low_39
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 5 - 409
Target Start/End: Complemental strand, 26251479 - 26251066
Alignment:
| Q |
5 |
tctccaacaatatttaaactatgttctttgaagttacaaagttaaaattatatgttaatctttgtttcagatcatacttattt-ccgtgttgaattgaat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
26251479 |
tctccaacaatatttaaactatgttctttgaagttacaaagttaaaattatatgttaatcttt-tttcagatcatacttattttccgtgttgaattgaat |
26251381 |
T |
|
| Q |
104 |
aacatttctattgtannnnnnn-gtcaagaaaaacattaccagt-ttttagttttattttgatcctcaaataaagtttgcaactgtttctctcaacaata |
201 |
Q |
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|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26251380 |
aacatttctattgtattttttttgtcaagaaaaacattaccagtattttagttttattttgatcctcaaataaagtttacaactgtttctctcaacaata |
26251281 |
T |
|
| Q |
202 |
aaaacacttggttctcctttcaaacnnnnnnnctcagttctannnnnnnnacaaaataatttcaaagaaaggagacatttttc-------aaacnnnnnn |
294 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
26251280 |
aaaacacttggttctcctttcaaacaaaaaaactcagttctattttttttacaaaataatttcaaagaaaggagacattttttcaaataaaaaataagaa |
26251181 |
T |
|
| Q |
295 |
ngtaaaccgcatgagcttctgacaagtacatgtaacgaacaaagtggaacttttgtcaattacctcaccaacaaattgtctaactcacttttattgtttc |
394 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26251180 |
ggtaaaccgcatgagcttctgacaagtacatgtaacgaacaaagtggaacttttgtcaattacctcaccaacaaattgtctaactcacttttattgtttc |
26251081 |
T |
|
| Q |
395 |
acaagcaacctgctc |
409 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
26251080 |
acaagcaatctgctc |
26251066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 9453004 - 9452967
Alignment:
| Q |
405 |
tgctcttttaagatgaagcggtgaattcattaaatata |
442 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
9453004 |
tgctcttttaagatgaagcggtaaattcattaaatata |
9452967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 46424191 - 46424154
Alignment:
| Q |
405 |
tgctcttttaagatgaagcggtgaattcattaaatata |
442 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |
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|
| T |
46424191 |
tgctcttttaagatgaagcgatgaattcattaaatata |
46424154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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