View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_41 (Length: 418)
Name: NF0925_low_41
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 30 - 407
Target Start/End: Original strand, 43523992 - 43524369
Alignment:
| Q |
30 |
tgtttgccatgtagatggtgtaggtgaaaaagatagaccaaacataaagcaaaatctaattaattcatacaacacagtacttggtccaaaggtaaaatct |
129 |
Q |
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| T |
43523992 |
tgtttgccatgtagatggtgtaggtgaaaaagatagaccaaacataaagcaaaatctaattaattcatacaacacagtacttggtccaaaggtaaaatct |
43524091 |
T |
|
| Q |
130 |
ctttgcatggacacaaccaatgcttcaaccaaagacaatcatcacccttcaagaaccagctcttcaaaagaacgaagatataatgacagagttaacatct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43524092 |
ctttgcatggacacaaccaatgcttcaaccaaagacaatcatcacccttcaagaaccagctcttcaaaagaacgtagatataatgacagagttaacatct |
43524191 |
T |
|
| Q |
230 |
ttgattggttttaccaattcagtattcttctccaaagaagtctcaaagaaagaaaatatgaatctttcaacacactaagagtttttcaagttgttgctgc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43524192 |
ttgattggttttaccaattcagtattcttctccaaagaagtctcaaagaaagaaaatatgaatctttcaacacactaagagtttttcaagttgttgctgc |
43524291 |
T |
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| Q |
330 |
tgctttactagctggtttaatgtggtggcattcagattataagaacgttcaagataggcttggattactcttcttcat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43524292 |
tgctttactagctggtttaatgtggtggcattcagattataagaacgttcaagataggcttggattactcttcttcat |
43524369 |
T |
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