View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_42 (Length: 417)

Name: NF0925_low_42
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_42
NF0925_low_42
[»] chr5 (9 HSPs)
chr5 (9-388)||(14377819-14378198)
chr5 (121-388)||(14237028-14237301)
chr5 (133-388)||(41434905-41435168)
chr5 (238-388)||(41441984-41442134)
chr5 (238-388)||(41448195-41448345)
chr5 (9-121)||(14237328-14237440)
chr5 (9-114)||(41442310-41442415)
chr5 (9-85)||(41448457-41448533)
chr5 (9-67)||(41435258-41435316)
[»] chr8 (2 HSPs)
chr8 (260-385)||(32117794-32117922)
chr8 (9-114)||(32118060-32118163)
[»] chr3 (6 HSPs)
chr3 (243-388)||(22744338-22744483)
chr3 (243-388)||(22666022-22666167)
chr3 (243-388)||(22722913-22723058)
chr3 (247-388)||(22746104-22746245)
chr3 (9-61)||(22666813-22666865)
chr3 (9-61)||(22723452-22723504)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 14377819 - 14378198
Alignment:
Q  9 gagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgtcttctaattttattgaacataaatactccttgcagacttaaatataagcaaa 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14377819 gagatgaagttagaaagaatgaaggaaagcttgactcttcaggtttgtcttctaattttattgaacataaatactccttgcagacttaaatataagcaaa 14377918  T
Q  109 agggtacatctatacgtccaaagggagtatatagtaaatttagaccaactgatatatagtattgctatatttaagttcagatggattatatagtatttct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14377919 agggtacatctatacgtccaaagggagtatatagtaaatttagaccaactgatatatagtattgctatatttaagttcagatgaattatatagtatttct 14378018  T
Q  209 acttacttttctaatgtcgaagttgatgatttatagttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttct 308  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378019 acttacttttctaatgtggaagttgatgatttatagttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttct 14378118  T
Q  309 acttaagaagagcaagattttggtccttgatgaagcaactgcatcagttgatacagctacagataatttgattcagcaaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378119 acttaagaagagcaagattttggtccttgatgaagcaactgcatcagttgatacagctacagataatttgattcagcaaa 14378198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 121 - 388
Target Start/End: Complemental strand, 14237301 - 14237028
Alignment:
Q  121 tacgtccaaagggagtatatagtaaatttagaccaactgatatatagtattgctatatttaagttcagatggattatatagtatttctacttact----- 215  Q
    |||||||| ||||||||| |||||||||||||||||||||| || | |||||||||||| ||||||| ||||||||||||||| ||||||| ||          
T  14237301 tacgtccagagggagtatgtagtaaatttagaccaactgatgtacattattgctatattcaagttcatatggattatatagtagttctactcacgaacat 14237202  T
Q  216 -tttctaatgtcgaagttgatgatttatagttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttctacttaa 314  Q
     || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14237201 attgctaatgtggaagttgatgatttatagttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttctgcttaa 14237102  T
Q  315 gaagagcaagattttggtccttgatgaagcaactgcatcagttgatacagctacagataatttgattcagcaaa 388  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14237101 gaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaa 14237028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 133 - 388
Target Start/End: Complemental strand, 41435168 - 41434905
Alignment:
Q  133 gagtatatagtaaatttagaccaactgatatatagtattgct-atatttaagttcagatggattatatagtatttctactta-----ctttt-ctaatgt 225  Q
    |||||||||||||||||||||||| |||| ||   | ||||| ||| |||||| || | ||| |||||||||||||||||       || || |||||||    
T  41435168 gagtatatagtaaatttagaccaaatgatgtacctttttgctcatacttaagtgcataaggagtatatagtatttctactcttgaacctattgctaatgt 41435069  T
Q  226 cgaagttgatgattt-atagttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttctacttaagaagagcaag 324  Q
     |||||||||  ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||    
T  41435068 ggaagttgattcttttatagttagtgagaatggtgagaattggagcatgggtcaaaggcagttggtttgcttaggtagggttcttcttaagaagagcaag 41434969  T
Q  325 attttggtccttgatgaagcaactgcatcagttgatacagctacagataatttgattcagcaaa 388  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41434968 attttggtgcttgatgaagccactgcatcagttgatacagctacagataatttgattcagcaaa 41434905  T

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Target: chr5; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 238 - 388
Target Start/End: Complemental strand, 41442134 - 41441984
Alignment:
Q  238 tttatagttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttctacttaagaagagcaagattttggtccttg 337  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  41442134 tttatagttagtgagaatggtgagaactggagcatgggtcagagacagttggtttgcctaggtagggttctgcttaagaagagcaagattttggtgcttg 41442035  T
Q  338 atgaagcaactgcatcagttgatacagctacagataatttgattcagcaaa 388  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41442034 acgaagcaactgcttcagttgatacagctacagataatttgattcagcaaa 41441984  T

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Target: chr5; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 238 - 388
Target Start/End: Complemental strand, 41448345 - 41448195
Alignment:
Q  238 tttatagttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttctacttaagaagagcaagattttggtccttg 337  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||||||||||||||||||||| ||||    
T  41448345 tttatagttagtgagaatggtgagaattggagcatgggtcaaaggcaattggtttgcttaggtagggttcttcttaagaagagcaagattttggtgcttg 41448246  T
Q  338 atgaagcaactgcatcagttgatacagctacagataatttgattcagcaaa 388  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41448245 acgaagcaactgcatcagttgatacagctacagataatttgattcagcaaa 41448195  T

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Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 14237440 - 14237328
Alignment:
Q  9 gagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgtcttctaattttattgaacataaatactccttgcagacttaaatataagcaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  14237440 gagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgttttctaattttattgaacataaatactccttgaagactttaatataagcaaa 14237341  T
Q  109 agggtacatctat 121  Q
    | |||||||||||    
T  14237340 aaggtacatctat 14237328  T

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Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 41442415 - 41442310
Alignment:
Q  9 gagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgtcttctaattttattgaacataaatactccttgcagacttaaatataagcaaa 108  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||   ||||||||||||||| ||||    
T  41442415 gagaggaagttcgaaagaaagaaggaaagcttgactcttcaggtttgtcttctaattttgttaaacataaacaatcccgtcagacttaaatataaacaaa 41442316  T
Q  109 agggta 114  Q
    | ||||    
T  41442315 aaggta 41442310  T

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Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 41448533 - 41448457
Alignment:
Q  9 gagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgtcttctaattttattgaacataaatactcc 85  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||    
T  41448533 gagatgaagttcgaaagaaagaaggaaagcttgactcttcaggtttgtattctaattttgttgaacacaaacactcc 41448457  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 41435316 - 41435258
Alignment:
Q  9 gagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgtcttctaatttt 67  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  41435316 gagacgaagttcgaaagaaagaaggaaagcttgactcttcaggtttgtattctaatttt 41435258  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 260 - 385
Target Start/End: Complemental strand, 32117922 - 32117794
Alignment:
Q  260 agaattggagcatgggtcagaggcagttggtttgccttggtagggttctacttaagaagagcaaga---ttttggtccttgatgaagcaactgcatcagt 356  Q
    |||||||||||||||||||||||||| | |||| ||| ||||||||||| ||||||||||||||||   ||||||| ||||||||||| |||||||||||    
T  32117922 agaattggagcatgggtcagaggcagatagttttcctaggtagggttctgcttaagaagagcaagaagattttggtgcttgatgaagccactgcatcagt 32117823  T
Q  357 tgatacagctacagataatttgattcagc 385  Q
    |||||||||||||||||||||| ||||||    
T  32117822 tgatacagctacagataatttgtttcagc 32117794  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 32118163 - 32118060
Alignment:
Q  9 gagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgtcttctaattttattgaacataaatactccttgcagacttaaatataagcaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||    ||||| ||||||||||||||    
T  32118163 gagatgaagttagaaagaaagaaggaaagcttgactcttcagg-ttgccttc-aattttattgaatataaatactctcctcagacataaatataagcaaa 32118066  T
Q  109 agggta 114  Q
    | ||||    
T  32118065 aaggta 32118060  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 243 - 388
Target Start/End: Original strand, 22744338 - 22744483
Alignment:
Q  243 agttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttctacttaagaagagcaagattttggtccttgatgaa 342  Q
    ||||| ||||||||| || ||||||||||||||||| ||||||||||| ||||| ||| | ||||| |||||||| ||||| |||||||| |||||||||    
T  22744338 agttactgagaatggagaaaattggagcatgggtcaaaggcagttggtgtgcctcggtcgtgttctccttaagaaaagcaaaattttggttcttgatgaa 22744437  T
Q  343 gcaactgcatcagttgatacagctacagataatttgattcagcaaa 388  Q
    || |||||||||||||| ||||||||||||||| | ||||| ||||    
T  22744438 gctactgcatcagttgacacagctacagataatattattcaacaaa 22744483  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 243 - 388
Target Start/End: Complemental strand, 22666167 - 22666022
Alignment:
Q  243 agttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttctacttaagaagagcaagattttggtccttgatgaa 342  Q
    ||||| ||||||||| || |||||||||||||||||| | |||||||| ||||| ||  | |||||||||||||| |||||||| ||||| || ||||||    
T  22666167 agttactgagaatggagaaaattggagcatgggtcagcgacagttggtctgcctcggacgtgttctacttaagaaaagcaagatcttggtgctcgatgaa 22666068  T
Q  343 gcaactgcatcagttgatacagctacagataatttgattcagcaaa 388  Q
    |||||||||||||||||||| || ||||||||| | ||||||||||    
T  22666067 gcaactgcatcagttgatacggcaacagataatattattcagcaaa 22666022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 388
Target Start/End: Complemental strand, 22723058 - 22722913
Alignment:
Q  243 agttagtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttctacttaagaagagcaagattttggtccttgatgaa 342  Q
    ||||| ||||||||| || |||||||||||||| || || |||||||| ||||| ||  | |||||||||||||| |||||||| ||||| || ||||||    
T  22723058 agttactgagaatggagaaaattggagcatggggcaaagacagttggtctgcctcggacgtgttctacttaagaaaagcaagatcttggtgctcgatgaa 22722959  T
Q  343 gcaactgcatcagttgatacagctacagataatttgattcagcaaa 388  Q
    |||||||||||||||||||| || ||||||||| | ||||||||||    
T  22722958 gcaactgcatcagttgatacggcaacagataatattattcagcaaa 22722913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 388
Target Start/End: Complemental strand, 22746245 - 22746104
Alignment:
Q  247 agtgagaatggtgagaattggagcatgggtcagaggcagttggtttgccttggtagggttctacttaagaagagcaagattttggtccttgatgaagcaa 346  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||  | |||||||| |  ||  | ||||| || |||||||| |    
T  22746245 agtgagaatggtgagaattggagtatgggtcagaggcagttggtctgtcttggtagagtgttgcttaagaaaaataaagtcttggttctagatgaagcca 22746146  T
Q  347 ctgcatcagttgatacagctacagataatttgattcagcaaa 388  Q
    ||||||||||||| || ||||| ||||||||||| |||||||    
T  22746145 ctgcatcagttgacacggctaccgataatttgatacagcaaa 22746104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 22666865 - 22666813
Alignment:
Q  9 gagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgtcttct 61  Q
    |||||||||| || |||||||||||||||||||||||| |||||||| |||||    
T  22666865 gagatgaagtgaggaagaaagaaggaaagcttgactctacaggtttgacttct 22666813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 22723504 - 22723452
Alignment:
Q  9 gagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgtcttct 61  Q
    |||||||||| || |||||||||||||||||||||||| |||||||| |||||    
T  22723504 gagatgaagtgaggaagaaagaaggaaagcttgactctacaggtttgacttct 22723452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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