View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_45 (Length: 408)
Name: NF0925_low_45
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 137 - 390
Target Start/End: Original strand, 31668990 - 31669243
Alignment:
| Q |
137 |
ttcataaaacttcaccttgagagatcacccaaaaacacacatgccgtggttacattactcgaatccatagacgacgatggcgaaggaaattgggaagtta |
236 |
Q |
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| T |
31668990 |
ttcacaaaacttcaccttgagagatcacagaaaaacacacatgtcgtgattacattactccattccttagacaacgagggcgaaggaaattggaaagtta |
31669089 |
T |
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| Q |
237 |
gtcctttctcaattcgccatttgatagaacacccaacctccattgttttcgaagacgagtgtcatcgttttaaggaaagcctttatcatttggtggactc |
336 |
Q |
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| T |
31669090 |
gtcctttctcaatgcgccgttagatagaacgtttggcatccatggtctgcaaagacaagtgtcatcgttttaatgacggcctttatcatgtggtgggctc |
31669189 |
T |
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| Q |
337 |
tgtgaacgggctggtttgttttgttggtcaagaaattcgtgaacgaaataaata |
390 |
Q |
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| T |
31669190 |
tatcagcgcactggtttgttttattggtcaaaaatatcatgaacgaaataaata |
31669243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 395
Target Start/End: Original strand, 29130352 - 29130521
Alignment:
| Q |
226 |
ttgggaagttagtcctttctcaattcgccatttgatagaacacccaacctccattgttttcgaagacgagtgtcatcgttttaaggaaagcctttatcat |
325 |
Q |
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| T |
29130352 |
ttggaaagttagtcctttctcaatgcgccatttgatagaacgtcaaacatccatggtctatgaagacgagtgtcttcattttaatgacgacctttatcat |
29130451 |
T |
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| Q |
326 |
ttggtggactctgtgaacgggctggtttgttttgttggtcaagaaattcgtgaacgaaataaatacatct |
395 |
Q |
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| T |
29130452 |
atggtggactctatcaacgaactcgtttgttttatgggtcaaaaatgtcatgaacgaaacaaatatatct |
29130521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 29130262 - 29130307
Alignment:
| Q |
133 |
caaattcataaaacttcaccttgagagatcacccaaaaacacacat |
178 |
Q |
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| T |
29130262 |
caaattcaaaaaacttcaccttgagagatcatccaaaaacacacat |
29130307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 35956238 - 35956281
Alignment:
| Q |
19 |
ctagagagaaattcgcatggttggtactgaagtcatcaggaaaa |
62 |
Q |
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| T |
35956238 |
ctagagagaaattcgcatggttggtactgaagtcgtcaggaaaa |
35956281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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