View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_46 (Length: 405)
Name: NF0925_low_46
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 79 - 339
Target Start/End: Complemental strand, 23940950 - 23940690
Alignment:
| Q |
79 |
cttttaaggtgcttagagtttattgcattgctttagttagttttagactttgttttacattccttgttgatgctttactataaataaacattccttgtac |
178 |
Q |
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| T |
23940950 |
cttttaaggtgtttagagtttattgcattgctttagttagttttagactttgttttacattccttgttgatgctttactataaataaacattccttgtac |
23940851 |
T |
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| Q |
179 |
tttgattatttgaatgaaaccaatatttcaccttacaagtggtatcagaggccttcattgggcattgtaactagagcttgaaaagtgcaacttttggcag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23940850 |
tttgattatttgaatgaaaccaatatttcaccttacaagtggtatcagaggccttcattgggcattgtaactagagcttgaaaagtgcaacttttggcgg |
23940751 |
T |
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| Q |
279 |
caaattcagttatgagttagttagattgatttgtttcttaaccaaccttcatctttcttct |
339 |
Q |
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| T |
23940750 |
caaattcagttatgagttagttagattgatttgtttcttaaccaaccttcatctttcttct |
23940690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 23938541 - 23938488
Alignment:
| Q |
79 |
cttttaaggtgcttagagtttattgcattgctttagttagttttagactttgtt |
132 |
Q |
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| T |
23938541 |
ctttcaaggtgtttagagttgattgcattgttttagttagttttagactctgtt |
23938488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 23938454 - 23938371
Alignment:
| Q |
131 |
ttttacattccttgttgatgctttactataaataaacattccttgtactttgattatttgaatgaaaccaatatttcaccttaca |
215 |
Q |
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| T |
23938454 |
ttttacactctttgttgatggtttac-atagataaacttctcttgtactttgattagataaatgaaaccaatatttacccttaca |
23938371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 44470506 - 44470566
Alignment:
| Q |
157 |
tataaataaacattccttgtactttgattatttgaatgaaaccaata-tttcaccttacaa |
216 |
Q |
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|||| |||| ||| |||||||||||| ||| |||||||||||||||| ||||||||||||| |
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| T |
44470506 |
tatatataagcatcccttgtactttgtttaattgaatgaaaccaatattttcaccttacaa |
44470566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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