View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_47 (Length: 401)
Name: NF0925_low_47
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_47 |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 47 - 401
Target Start/End: Original strand, 25229209 - 25229569
Alignment:
| Q |
47 |
ttgaaattccaaagattagaagcaggtgagaatggacttcataataggatattcagaaaagcaacagaaggaaagatgactgaaacataaccaaatgtgt |
146 |
Q |
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|||||||||||||||||||||||| | ||||||||||||| ||||||| |||||||||||||| | |||||||||||| ||||||||||||||| |||| |
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| T |
25229209 |
ttgaaattccaaagattagaagcaaatcagaatggacttcagaataggagattcagaaaagcaagataaggaaagatgattgaaacataaccaaaggtgt |
25229308 |
T |
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| Q |
147 |
acaagaagatcagaagcaaaaatcataagctgataaccaaagcacaacgac--tagtttcaagattttcttggtcaacagagaaaagcacaaaaggacaa |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25229309 |
acaagaagatcagaagcaaaaatcataagctgataaccaaagcacaacgactatagtttcaagattttcttggtcaacagagaaaagcacaaaaggacaa |
25229408 |
T |
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| Q |
245 |
aataatagctataaagggtagcgtcattcaaatgagaacacgcctctaaacaacacaaactctcaacaaaatattttatg----atttcagaatcacttg |
340 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |
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| T |
25229409 |
aataatagctataaagggtagcatcattcaaatgagaacacgcctctaaacaacacaaattctcaaaaaaatattttatgatatatttcagaatcacttg |
25229508 |
T |
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| Q |
341 |
atctaaaaaagatcagaagctgaaaattacagattgcttgaaagagatcatatgcatcttt |
401 |
Q |
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| T |
25229509 |
atctaaaaaagatcagaagctgaaaattacagattgcttgaaagagatcatatacatcttt |
25229569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 255
Target Start/End: Original strand, 21414563 - 21414704
Alignment:
| Q |
114 |
aaggaaagatgactgaaacataaccaaatgtgtacaagaagatcagaagcaaaaatcataagctgataaccaaagcacaacgactagtttcaagattttc |
213 |
Q |
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|||||| || ||| |||||||||||||| || ||||||| || |||| |||||| | ||||||| || ||| |||||||||||||||| |||| |||| |
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| T |
21414563 |
aaggaatgacgacagaaacataaccaaagttgcacaagaaagtctgaagtaaaaataagaagctgagaagcaatgcacaacgactagttttaagactttc |
21414662 |
T |
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| Q |
214 |
ttggtcaacagagaaaagcacaaaaggacaaaataatagcta |
255 |
Q |
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| T |
21414663 |
ttggtccacattgcaaaccacaaaaggacaaagtactagcta |
21414704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 9355004 - 9354907
Alignment:
| Q |
152 |
aagatcagaagcaaaaatcataagctgataaccaaagcacaacgactagtttcaagattttcttggtcaacagagaaaagcacaaaaggacaaaataa |
249 |
Q |
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||||||| ||||||| |||||||||| |||| ||| ||| |||| |||||||||| | |||||| | | ||| | |||||||||||||||||||||| |
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| T |
9355004 |
aagatcacaagcaaatatcataagctaataagcaatgcataacggctagtttcaatactttcttagcccacaaggcaaagcacaaaaggacaaaataa |
9354907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 401
Target Start/End: Original strand, 5486352 - 5486485
Alignment:
| Q |
268 |
tcattcaaatgagaacacgcctctaaacaacacaaactctcaacaaaatattttatgatttcagaatcacttgatctaaaaaagatcagaagctgaaaat |
367 |
Q |
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|||||||||||||||||| ||||| |||||| | ||||||| |||||| ||||||| || |||||||| |||| ||||||||||||||| ||||| |
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| T |
5486352 |
tcattcaaatgagaacacacctctccacaacagagactctcatcaaaatcttttatgtcagcataatcactttatctgaaaaagatcagaagcagaaaaa |
5486451 |
T |
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| Q |
368 |
tacagattgcttgaaagagatcatatgcatcttt |
401 |
Q |
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| T |
5486452 |
taaaaattgcttgaaagaaatcataatcatcttt |
5486485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 15963675 - 15963613
Alignment:
| Q |
188 |
gcacaacgactagtttcaagattttcttggtcaacagagaaaagcacaaaaggacaaaataat |
250 |
Q |
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| T |
15963675 |
gcacaacgattagtttcaaatctttcttggtccacaaggaaaatcacaaaaggacaaaataat |
15963613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 17747787 - 17747876
Alignment:
| Q |
309 |
aacaaaatattttatgatttcagaatcacttgatctaaaaaagatcagaagctgaaaattacagattgcttgaaagagatcatatgcatc |
398 |
Q |
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|||||||| ||||||||||||| | |||||| ||| |||| | ||||||||| ||||| |||| |||||||||||| |||||||| |||| |
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| T |
17747787 |
aacaaaatcttttatgatttcaaattcacttaatcaaaaagatatcagaagcagaaaagtacaaattgcttgaaagtgatcatattcatc |
17747876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 11433781 - 11433839
Alignment:
| Q |
197 |
ctagtttcaagattttcttggtcaacagagaaaagcacaaaaggacaaaataatagcta |
255 |
Q |
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| T |
11433781 |
ctagtttcaagactttcttggtccacaaggcaaagcacaaaatgacaaaataatggcta |
11433839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 18737716 - 18737544
Alignment:
| Q |
47 |
ttgaaattccaaagattagaagcaggtgagaatggacttcataataggatattcagaaaagcaacagaaggaaagatgactgaaacataaccaaatgtgt |
146 |
Q |
| |
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|||||| ||||||| | |||||||||| |||| || |||||||| ||| ||||| |||| | || |||||| ||||| |||||| ||||||| ||| |
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| T |
18737716 |
ttgaaaatccaaagttcagaagcaggtcagaaaagaattcataatcggaaattcataaaaaaatcaaaaggaatgatgatagaaacacaaccaaaggtgc |
18737617 |
T |
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| Q |
147 |
acaagaagatcagaagcaaaaatcataagctgataaccaaagcacaacgactagtttcaagattttcttggtc |
219 |
Q |
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|||| |||||||||||| || |||| ||| ||| || || |||||||| |||||||||| | ||||||||| |
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| T |
18737616 |
acaataagatcagaagccaagatcaaaagttgagaagcattgcacaacggctagtttcaaaacattcttggtc |
18737544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 12086050 - 12085992
Alignment:
| Q |
198 |
tagtttcaagattttcttggtcaacagagaaaagcacaaaaggacaaaataatagctat |
256 |
Q |
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|||||||||| ||||||||||||||| | ||||||||||| ||||| |||| |||||| |
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| T |
12086050 |
tagtttcaagtttttcttggtcaacaaggcaaagcacaaaatgacaagataacagctat |
12085992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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