View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_48 (Length: 394)
Name: NF0925_low_48
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 96 - 385
Target Start/End: Original strand, 28048054 - 28048343
Alignment:
| Q |
96 |
attttgtcatgcactgtttgaaacatgcaaggtcacactaaaataattactcaaaaagtttacctaggcatggctaagtccattccatggttgttgtgag |
195 |
Q |
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| T |
28048054 |
attttgtcacgcactgtttggaacatgcaaggtcagactcaaataattactaaacaagtttacctgggcatggctaagtccattccatggttgttgtaag |
28048153 |
T |
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| Q |
196 |
gtcattcattcccacaggatgacaccaaaactgtaaacatcagacttctcgtttgtaggttctccgcgaagaaactctggagccatccactcagactgaa |
295 |
Q |
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| T |
28048154 |
gtcactagttcccacaggatgacaccaaaactgtaaacatcagacttctcgtttgtaggttctccacgaagaaactctggagccatccactcaggctgaa |
28048253 |
T |
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| Q |
296 |
aataaaattaagagagttacacaattattgaaggtgagtagccgtgaagtgaaagttcaacctgcaaaatattaatagaatggcgacttt |
385 |
Q |
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| T |
28048254 |
aataaaattaagagaattacacacttattgaaggtgagtagacgtgaagtgaaagtctaacctataaaatattaatagaatggcgacttt |
28048343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 303
Target Start/End: Complemental strand, 45979995 - 45979843
Alignment:
| Q |
151 |
aagtttacctaggcatggctaagtccattccatggttgttgtgaggtcattcattcccacaggatgacaccaaaactgtaaacatcagacttctcgtttg |
250 |
Q |
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|||||||||| || | || |||||||| ||||||| ||||| ||||| |||||| ||||| || ||||||||||| || |||| ||||| || | |
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| T |
45979995 |
aagtttacctggggagggttaagtccactccatggctgttgcatggtcacaagttcccataggataactccaaaactgtatacgtcagctttctcattcg |
45979896 |
T |
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| Q |
251 |
taggttctccgcgaagaaactctggagccatccactcagactgaaaataaaat |
303 |
Q |
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| T |
45979895 |
aaggttctccacggagaaattccggggccatccactcaggctaaaaataaaat |
45979843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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