View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_49 (Length: 392)
Name: NF0925_low_49
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 41 - 321
Target Start/End: Original strand, 37662524 - 37662804
Alignment:
| Q |
41 |
agcaaggagtggaattataaaataaaagtgaccaaaatagacccgaaatattgtgaagaaaacaactagtaattaagtgagattattgaacgaaataaag |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
37662524 |
agcaaggagtggaattataaaataaaagtgaccaaaatagacccgaaatattgtgaagaaaacaactactaattaagtgagattattgagcgaaataaag |
37662623 |
T |
|
| Q |
141 |
agaacatttgagattactgttgagaaatcggaatttattgaacgaaataaatagaacataaaagaaattgactccagaaaagaagaaaataaacagccat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37662624 |
agaacatttgagattactgttgagaaatcggaatttattgaacgaaataaatagaacataaaagaaattgactccagaaaagaagaaaataaacagccat |
37662723 |
T |
|
| Q |
241 |
tttccttggaaaataactttatataattgatgacggattgtttgagaaagtttcaagataaggttttgagtgatattgttg |
321 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37662724 |
tttccttggaaaataactttgtataattgatgacggattgtttgagaaagtttcaagataaggttttgagtgatattgttg |
37662804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 9452967 - 9453005
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaa |
45 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaa |
9453005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 46424154 - 46424192
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaa |
45 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaa |
46424192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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