View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_5 (Length: 694)

Name: NF0925_low_5
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_5
NF0925_low_5
[»] chr5 (6 HSPs)
chr5 (1-335)||(4891047-4891381)
chr5 (382-681)||(4890702-4891001)
chr5 (1-93)||(4916155-4916247)
chr5 (592-676)||(28822735-28822818)
chr5 (590-630)||(7462835-7462875)
chr5 (590-630)||(20501401-20501441)
[»] chr7 (2 HSPs)
chr7 (592-679)||(7836912-7836998)
chr7 (590-630)||(5073273-5073313)
[»] chr1 (5 HSPs)
chr1 (590-631)||(33843218-33843259)
chr1 (590-631)||(33950720-33950761)
chr1 (590-630)||(44579888-44579928)
chr1 (590-630)||(1247261-1247301)
chr1 (590-630)||(41620385-41620425)
[»] scaffold0121 (1 HSPs)
scaffold0121 (589-627)||(4288-4326)
[»] chr4 (2 HSPs)
chr4 (592-629)||(9972134-9972171)
chr4 (590-630)||(41621291-41621331)
[»] chr3 (3 HSPs)
chr3 (590-627)||(21356870-21356907)
chr3 (590-622)||(9219778-9219810)
chr3 (594-630)||(27837276-27837312)
[»] chr8 (1 HSPs)
chr8 (590-630)||(14342528-14342568)
[»] chr6 (1 HSPs)
chr6 (590-630)||(32388232-32388272)
[»] chr2 (3 HSPs)
chr2 (590-630)||(9330525-9330565)
chr2 (598-630)||(13242755-13242787)
chr2 (590-630)||(33549078-33549118)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 4891381 - 4891047
Alignment:
Q  1 gtttaatttttccataatgactattgatgtgattaaattaagttaccaccttttgtttcccaatttaagagattgatgttccaatttatcatagaacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4891381 gtttaatttttccataatgactattgatgtgattaaattaagttaccaccttttgtttcacaatttaagagattgatgttccaatttatcatagaacaag 4891282  T
Q  101 acatgctttcgtatcgtctttatagcacggtttctagtttctggtcaatttacttcgaggtccctaccaaggaattgtactattaaaatactattgtaga 200  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4891281 acttgctttcgtatcctctttatagcacggtttctagtttctggtcaatttacttcgaggtccctaccaaggaattgtactattaaaatactattgtaga 4891182  T
Q  201 tatggttattaaagtatttgtggttgcatgtatttaaaatatgattaatgnnnnnnncgtacaaaaaatatgaataatgttatcatgatgtgatgtggtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  4891181 tatggttattaaagtatttgtggttgcatgtatttaaaatatgattaatgtttttttcgtacaaaaaatatgaataatgttatcatgatgtgatgtggtc 4891082  T
Q  301 cttacacgttcagccatgatcacagatctatttat 335  Q
    |||||||||||||||||||||||||||||||||||    
T  4891081 cttacacgttcagccatgatcacagatctatttat 4891047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 382 - 681
Target Start/End: Complemental strand, 4891001 - 4890702
Alignment:
Q  382 catttgcacgtgggaaattgtttagaccattggacaaatgaatcgtggcatggcagattggcagtgtcacactgtcactacacaatatccgatctttt-a 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  4891001 catttgcacgtgggaaattgtttagaccattggacaaatgaatcgtggcatggcagattggctgtgtcacactgtcactacacaatatccgatcttttta 4890902  T
Q  481 aagaaattaaagattttttaaataaaaacagcaacgaaaatatttgnnnnnnnatccaattaatgaagatgtgacataattttacaaataagactcaaat 580  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||||       ||||||||||||||||||||||||||| |||| ||||||| |||| |    
T  4890901 aagaaattaaagattttttaaataaaaatagcaaagaaa-tatttgtttttttatccaattaatgaagatgtgacataatcttacgaataagattcaagt 4890803  T
Q  581 ctagcatatagcttaactcagttgatagagatattgtataatttatgcagattcgagattcgaactccgaacatatctcacttctccatatttaattgtc 680  Q
    ||||| |||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||    
T  4890802 ctagcgtataacttagctcagttgatagaaatattgcataatttatgcaggttcgagattcgaaccccgaacatatctcacttttcaatatttaattgtc 4890703  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4916247 - 4916155
Alignment:
Q  1 gtttaatttttccataatgactattgatgtgattaaattaagttaccaccttttgtttcccaatttaagagattgatgttccaatttatcata 93  Q
    |||||||||||||||||| ||||||||| | ||||||| ||| || ||||||||| ||  |||||| |||||||| | |||||||||| ||||    
T  4916247 gtttaatttttccataataactattgatattattaaatcaagctaacaccttttgcttaacaatttcagagattggtattccaatttagcata 4916155  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 28822818 - 28822735
Alignment:
Q  592 cttaactcagttgatagagatattgtataatttatgcaga-ttcgagattcgaactccgaacatatctcacttctccatatttaat 676  Q
    |||| |||||||| ||| || |||||||||||||||||||  ||| ||||||||| ||||||  | | ||||||||||||||||||    
T  28822818 cttatctcagttggtagggacattgtataatttatgcagagatcgggattcgaaccccgaac--accccacttctccatatttaat 28822735  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 7462835 - 7462875
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    ||||||||| ||||||||| || ||||||||||||||||||    
T  7462835 agcttaacttagttgatagggacattgtataatttatgcag 7462875  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 20501401 - 20501441
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    ||||||||||||||| |||||| |||| |||||||||||||    
T  20501401 agcttaactcagttggtagagacattgcataatttatgcag 20501441  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 679
Target Start/End: Complemental strand, 7836998 - 7836912
Alignment:
Q  592 cttaactcagttgatagagatattgtataatttatgca-gattcgagattcgaactccgaacatatctcacttctccatatttaattgt 679  Q
    ||||||||||||||||| || ||||||||||||||||| |  ||| | ||||||||||||||| |   |||||||||| ||||||||||    
T  7836998 cttaactcagttgatagggacattgtataatttatgcagggatcggggttcgaactccgaacaca--ccacttctccacatttaattgt 7836912  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 5073273 - 5073313
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    ||||||||||||||| ||||||||||||||| | |||||||    
T  5073273 agcttaactcagttggtagagatattgtatattatatgcag 5073313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 631
Target Start/End: Complemental strand, 33843259 - 33843218
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcaga 631  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  33843259 agcttagctcagttgatagagatattgcataatttatgcaga 33843218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 631
Target Start/End: Original strand, 33950720 - 33950761
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcaga 631  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  33950720 agcttagctcagttgatagagatattgcataatttatgcaga 33950761  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 44579888 - 44579928
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  44579888 agcttagctcagttgatagagacattgtataatttatgcag 44579928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 1247261 - 1247301
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    ||||||||||||||||||  ||||||| |||||||||||||    
T  1247261 agcttaactcagttgataaggatattgcataatttatgcag 1247301  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 41620385 - 41620425
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  41620385 agcttaactcagttgataggaacattgtataatttatgcag 41620425  T

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Target: scaffold0121 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 627
Target Start/End: Original strand, 4288 - 4326
Alignment:
Q  589 tagcttaactcagttgatagagatattgtataatttatg 627  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  4288 tagctgaactcagttggtagagatattgtataatttatg 4326  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 629
Target Start/End: Original strand, 9972134 - 9972171
Alignment:
Q  592 cttaactcagttgatagagatattgtataatttatgca 629  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  9972134 cttaactcagttgatagagataatgtataatatatgca 9972171  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Complemental strand, 41621331 - 41621291
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    |||||| |||| |||| ||||||||||||||||||||||||    
T  41621331 agcttagctcaattgacagagatattgtataatttatgcag 41621291  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 627
Target Start/End: Original strand, 21356870 - 21356907
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatg 627  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  21356870 agcttaactcagttgatagatatattgtataatatatg 21356907  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 622
Target Start/End: Original strand, 9219778 - 9219810
Alignment:
Q  590 agcttaactcagttgatagagatattgtataat 622  Q
    |||||| ||||||||||||||||||||||||||    
T  9219778 agcttagctcagttgatagagatattgtataat 9219810  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 630
Target Start/End: Original strand, 27837276 - 27837312
Alignment:
Q  594 taactcagttgatagagatattgtataatttatgcag 630  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  27837276 taactcaattgatagagacattgtataatttatgcag 27837312  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Complemental strand, 14342568 - 14342528
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    ||||||||||||||| |||||| |||| |||||||||||||    
T  14342568 agcttaactcagttggtagagacattgcataatttatgcag 14342528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 32388232 - 32388272
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    ||||||||||||||||||| || |||| |||||||||||||    
T  32388232 agcttaactcagttgatagggacattgcataatttatgcag 32388272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Complemental strand, 9330565 - 9330525
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  9330565 agcttaactcagttgatagagatattgcatattatatgcag 9330525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 630
Target Start/End: Complemental strand, 13242787 - 13242755
Alignment:
Q  598 tcagttgatagagatattgtataatttatgcag 630  Q
    ||||||||||||||||||| |||||||||||||    
T  13242787 tcagttgatagagatattgcataatttatgcag 13242755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Complemental strand, 33549118 - 33549078
Alignment:
Q  590 agcttaactcagttgatagagatattgtataatttatgcag 630  Q
    |||||| |||||||||||||||||||||||| | |||||||    
T  33549118 agcttagctcagttgatagagatattgtatattatatgcag 33549078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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