View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_52 (Length: 390)
Name: NF0925_low_52
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 96 - 379
Target Start/End: Complemental strand, 47188791 - 47188508
Alignment:
| Q |
96 |
tcatctaatggattagcttttggagcaaaatccaaacacacttaacatggcacgatcataatcagattaagggtgtgtaaccattgaagttgtattagag |
195 |
Q |
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| T |
47188791 |
tcatctaatggattagcttttggagcaaaatccaaacacacttaacatggcacgatcataatcagattaagggtgtgtaaccattgaagttgtattagag |
47188692 |
T |
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| Q |
196 |
tcctgcattctcaaagttcatgtgttgtttaatgcatacatatttgtgtgtgtcgacactcttatcttttgaattaattaatttttatgaatgaaatgca |
295 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47188691 |
tcctgcattcttaaagttcatgtgttgtttaatgcatacatatatgtgtgtgtcgacactcttatcttttgagttaattaatttttatgaatgaaatgca |
47188592 |
T |
|
| Q |
296 |
attttattaaaggatcttgttattggattgaaaactactacaaaccctagcttagcagcttcacaacaaactctttttgttcat |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47188591 |
attttattaaaggatcttgttattggattgaaaactactacaaaccctagcttagcagcttcacaacaaactctttttgttcat |
47188508 |
T |
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