View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_54 (Length: 378)
Name: NF0925_low_54
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 54238297 - 54238564
Alignment:
| Q |
30 |
ctattaacgaatgatgacccaacatataaattgttagcattagaaaaatttgaaccagagacctaaagaaaaacacacattttcgaggtcacaaacctac |
129 |
Q |
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| T |
54238297 |
ctattaacgaatgatgacccaacatataaattgttagcattagaaaaatttgaaccagagatctaaagaaaaacacaca-tttcgagatcacaaacctac |
54238395 |
T |
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| Q |
130 |
gccactaaactaaccatgggtttttaaataaaaacgcatttgattaac-nnnnnnnncacaaatgcaagattcttggagaaaattgagtttgaagggaag |
228 |
Q |
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| T |
54238396 |
gccactaaactaaccatgggtttttaaataaaaatgcatttaattaactttttttttcacaaatgcaagattcttggagaaaattgagtttgaag----g |
54238491 |
T |
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| Q |
229 |
gaaggaaataataggaaggttggatttgatgaagaacataatattactggtgagaaagttttcgtgcctgtaa |
301 |
Q |
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| T |
54238492 |
gaaggaaataataggaaggttggatttgatgaagaacataatattactggtgagaaagttttcgtgcctgtaa |
54238564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 54238589 - 54238635
Alignment:
| Q |
323 |
gattatatagcattcacacataatttattattccgccacagtattat |
369 |
Q |
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| T |
54238589 |
gattatatagcattcacacataatttattattccgccacagtattat |
54238635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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