View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_58 (Length: 362)
Name: NF0925_low_58
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 51118257 - 51118501
Alignment:
| Q |
30 |
tcctttcttttataagaccaaactaggcatttaagattagaaactgtggtcggactacctaatcttagatagtttcctcccctttactctctttgaggcc |
129 |
Q |
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| T |
51118257 |
tcctttcgtttataagaccaaactaggcatttaagattagaaactgtggtcggactacctaatcttagatagtt-cctcccctttactctctttgaggcc |
51118355 |
T |
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| Q |
130 |
atagtggaagaggaactagtgatggaagcaaaggaagagaataccaaaagttgttgaaagaattagattgtgaacttcttcctaggtgctgattatattt |
229 |
Q |
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| T |
51118356 |
atagtggaagaggaactagtgatggaagcaaataaagagaataccaaaagttgttgaaagaattagattgtgaacttcttcctaggtgctgattatattt |
51118455 |
T |
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| Q |
230 |
ttaagcattgggaaccttgaaatacgatgacatgtcatcttacgtt |
275 |
Q |
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| T |
51118456 |
ttaagcattgggaaccttgaaatacgatgacatgtcatcttacgtt |
51118501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 51118541 - 51118578
Alignment:
| Q |
315 |
gatccaaaattaaaggagttttagaacaattgcctatg |
352 |
Q |
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| T |
51118541 |
gatccaaaattaaaggagttttagaacaattgcctatg |
51118578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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