View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_6 (Length: 694)

Name: NF0925_low_6
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_6
NF0925_low_6
[»] chr3 (1 HSPs)
chr3 (16-666)||(50445184-50445833)


Alignment Details
Target: chr3 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 16 - 666
Target Start/End: Complemental strand, 50445833 - 50445184
Alignment:
Q  16 acgacttaggaacatttgttttgagaaaggaaaattgttcatgtttatcatcaacaaaaatggagagattgtaaaaaccaagttggtttgaagaacactc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50445833 acgacttaggaacatttgttttgagaaaggaaaattgttcatgtttatcatcaacaaaaatggagagattgtaaaaaccatgttggtttgaagaacactc 50445734  T
Q  116 aaaggagaacaaattgtcttttaatgtgcgcagtcaagaac-tgaagaactaatggttgtaatctatcaagaacatcaaggtgatcctctggtaaaacac 214  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50445733 aaag-agaacaaattgtcttttaatgtgcgcagtcaagaacatgaagaactaatggttgtactctatcaagaacatcaaggtgatcctctggtaaaacac 50445635  T
Q  215 tttgtaaaggcaaattattgaagatcgtatggaagtacactaaaagaaatacttgctatgaagcaagatcattattatggataaatgcgctccgaagaga 314  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50445634 tttgtaaaggcaa-ttattgaagatcgtatggaagcacactgaaagaaatacttgctatgaagcaagatcattattatggataaatgcgctccgaagaga 50445536  T
Q  315 atagttactcttatcgaagagagacactctgatataactataggctggagcaactacacattctagtataacttcatgcagtgaaattgtatggtataac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50445535 atagttactcttatcgaagagagacactctgatataactataggctggagcaactacacattctagtataacttcatgcagtgaaattgtatggtataac 50445436  T
Q  415 tcatcacatttcaagacgttgtgcgtccatttattagtgttagagtcatcatcacatctccccaaattaaatcctaatttaaggcttactcgacaagtga 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50445435 tcatcacatttcaagacgttgtgcgtccatttattagtgttagagtcatcatcacatctccccaaattaaatcctaaattaaggcttactcgacaagtga 50445336  T
Q  515 cattaaataaaggaagtaaaagtataagaatgtgaaaggttagggtgagaagtgacatattcagcaaatcatctcaacaccacctaccttaattttagct 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50445335 cattaaataaaggaagtaaaagtataagaatgtgaaaggttagggtgagaagtgacatattcagcaaatcatctcaacaccacctaccttaattttagct 50445236  T
Q  615 gactctatgggagtaaggtagtacaacaaaggtatactctcatggttttggt 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50445235 gactctatgggagtaaggtagtacaacaaaggtatactctcatggttttggt 50445184  T

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