View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_63 (Length: 352)
Name: NF0925_low_63
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 47 - 343
Target Start/End: Original strand, 44008789 - 44009079
Alignment:
| Q |
47 |
agctagccttttagaaaataccaaaaacaagtcaaatttttatacagacttctttaagtgaaaattaagagtgacacacaagaaaactaggtgtgttcta |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44008789 |
agctagccttttagaaaataccaaaaacaagtcaaatttttata--gacttctttaagtgaaaattaagagtgacacacaagaaaactaggtgtgttcta |
44008886 |
T |
|
| Q |
147 |
tttaaacattgtctgtaaagtagtatcagaactcttccatacaccacttttggtgtataaactataattaaagagttctgaatggaaatatgactaaaac |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44008887 |
tttaaacattgtctgtaaagtagtatcagaactctttcatacaccacttttggtgtataaactataa----agagttctgaatggaaatatgactaaaac |
44008982 |
T |
|
| Q |
247 |
caaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatga |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44008983 |
caaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatga |
44009079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 44005025 - 44005153
Alignment:
| Q |
215 |
taaagagttctgaatggaaatatgactaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttt |
314 |
Q |
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|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44005025 |
taaagagttctgaatgaaactataactaaaaccaaatggcctttgcatccataagcatttgtttgagtgatccatcaacatgatgagatatcacatcttt |
44005124 |
T |
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| Q |
315 |
tgaagatccaacaaattttccacctatga |
343 |
Q |
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||| ||||| ||||||||||||||||||| |
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| T |
44005125 |
tgaggatcctacaaattttccacctatga |
44005153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 39846938 - 39846834
Alignment:
| Q |
239 |
actaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacc |
338 |
Q |
| |
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|||| ||||||||||| | ||| |||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||| || || |||||||||||||| |
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| T |
39846938 |
actagaaccaaatggctctagcagccatgagcatttgtttgagtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccacc |
39846839 |
T |
|
| Q |
339 |
tatga |
343 |
Q |
| |
|
|||| |
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|
| T |
39846838 |
aatga |
39846834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaaca |
46424194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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