View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_64 (Length: 351)

Name: NF0925_low_64
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_64
NF0925_low_64
[»] chr7 (8 HSPs)
chr7 (56-345)||(27834661-27834945)
chr7 (124-260)||(28580255-28580404)
chr7 (124-260)||(28404396-28404544)
chr7 (124-260)||(28585255-28585403)
chr7 (56-98)||(28417776-28417818)
chr7 (146-260)||(28417853-28417979)
chr7 (203-257)||(28420317-28420371)
chr7 (203-257)||(28581819-28581873)
[»] chr4 (1 HSPs)
chr4 (7-47)||(9452967-9453007)
[»] chr1 (1 HSPs)
chr1 (7-47)||(46424154-46424194)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 56 - 345
Target Start/End: Complemental strand, 27834945 - 27834661
Alignment:
Q  56 tttgtcaatttcatgagactgaaaatatttcaaatacattaaccattgtcattttgatcttctgtattttaactattttgagagatcgtgttgtgttgta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||||    
T  27834945 tttgtcaatttcatgagactgaaaatatttcaaatacattaaccattgtcattttgatcttctgtattttaagtattttgagagatgatgttgtgctgta 27834846  T
Q  156 gattgctgcagggttgtgtgacaatcttttgacagcaagggactacgagaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatcct 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  27834845 gattgctgcagggttgtgtgacaatcttttgacagcaagggactacgagaagccggtgtttgttgcaccatcaatca---atgctatgtggagaaatcct 27834749  T
Q  256 ttcacgagtcgaagattgaagttaaaaagcctattaaattgcaaattgacaacaagtttgcagtaaatttagccaaaaaccctatgctac 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  27834748 ttcacgagtcgaagattgaagttaaaaagcctattaaattgcaaattgaca--aagtttgcagtaaatttagccaaaaaccctatgctac 27834661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 28580404 - 28580255
Alignment:
Q  124 ttaactattttgagagatcgtgtt-gtgttgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccg 210  Q
    ||||||||||||||| || ||||| ||||||||||||||||  |||||  |||||||||| |||||            |||| |||||||||||||||||    
T  28580404 ttaactattttgagacatggtgtttgtgttgtagattgctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaagccg 28580305  T
Q  211 gtgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac 260  Q
     ||||||||||||| ||||| || ||||| ||||||||||||||||||||    
T  28580304 atgtttgttgcaccgtcaatgaatgatgccatgtggagaaatcctttcac 28580255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 260
Target Start/End: Original strand, 28404396 - 28404544
Alignment:
Q  124 ttaactattttgagagatcgtgttgtgttgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccgg 211  Q
    |||||| |||||||  || ||||||||||||||||||||| |||||||||||||||||| |||||            |||| |||||||||||||||||     
T  28404396 ttaactgttttgaggaatggtgttgtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccga 28404495  T
Q  212 tgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac 260  Q
    |||| ||||||||||||||  | | |  |||||||||||| ||||||||    
T  28404496 tgttcgttgcaccatcaatggatggttgtatgtggagaaaccctttcac 28404544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 28585403 - 28585255
Alignment:
Q  124 ttaactattttgagagatcgtgttgtgttgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccgg 211  Q
    |||||| |||||||  || ||||||||||||||||| ||| |||||||||||||||||| |||||            |||| |||||||||||||||||     
T  28585403 ttaactgttttgaggaatggtgttgtgttgtagatttctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccga 28585304  T
Q  212 tgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac 260  Q
    |||||||||||||||||||  | | |  |||||||||||| ||||||||    
T  28585303 tgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcac 28585255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 28417776 - 28417818
Alignment:
Q  56 tttgtcaatttcatgagactgaaaatatttcaaatacattaac 98  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  28417776 tttgtcaatttcattagactgaaaatatttcaaatacattaac 28417818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 28417853 - 28417979
Alignment:
Q  146 ttgtgttgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccggtgtttgttgcaccatcaatcaa 233  Q
    |||||||||||||||||| |||||||||||||||||| |||||            |||| ||||||||||||||||| |||| ||||||||||||||  |    
T  28417853 ttgtgttgtagattgctggagggttgtgtgacaatctattgacaagcattgtgagagcatgggactacgagaagccgatgttcgttgcaccatcaatgga 28417952  T
Q  234 cgatgctatgtggagaaatcctttcac 260  Q
     | |  |||||||||||| ||||||||    
T  28417953 tggttgtatgtggagaaaccctttcac 28417979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 28420317 - 28420371
Alignment:
Q  203 agaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatccttt 257  Q
    |||||||  ||||||| ||||||||||| || ||||| |||||||||||||||||    
T  28420317 agaagccaatgtttgtagcaccatcaatgaatgatgcaatgtggagaaatccttt 28420371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 28581873 - 28581819
Alignment:
Q  203 agaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatccttt 257  Q
    |||||||  ||||||| ||||||||||| || ||||| |||||||||||||||||    
T  28581873 agaagccaatgtttgtagcaccatcaatgaatgatgcaatgtggagaaatccttt 28581819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
Q  7 tatatttaatgaattcaccgcttcatcttaaaagagcaaca 47  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  9452967 tatatttaatgaatttaccgcttcatcttaaaagagcaaca 9453007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
Q  7 tatatttaatgaattcaccgcttcatcttaaaagagcaaca 47  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  46424154 tatatttaatgaattcatcgcttcatcttaaaagagcaaca 46424194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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