View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_65 (Length: 346)

Name: NF0925_low_65
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_65
NF0925_low_65
[»] chr7 (9 HSPs)
chr7 (11-317)||(25706075-25706377)
chr7 (180-282)||(2351083-2351185)
chr7 (33-162)||(21471412-21471541)
chr7 (181-249)||(24596963-24597031)
chr7 (181-266)||(3268908-3268993)
chr7 (207-245)||(5214035-5214073)
chr7 (184-242)||(5312752-5312810)
chr7 (181-267)||(8308973-8309059)
chr7 (181-267)||(7372508-7372593)
[»] chr1 (7 HSPs)
chr1 (181-315)||(15416866-15417001)
chr1 (179-284)||(13807678-13807782)
chr1 (181-315)||(25727802-25727937)
chr1 (181-315)||(25736210-25736345)
chr1 (181-316)||(26102144-26102279)
chr1 (195-265)||(18795282-18795352)
chr1 (185-316)||(52271137-52271268)
[»] chr4 (5 HSPs)
chr4 (181-316)||(16442150-16442286)
chr4 (181-316)||(31859793-31859928)
chr4 (180-256)||(20044264-20044340)
chr4 (179-284)||(30624951-30625056)
chr4 (279-316)||(19601983-19602020)
[»] chr8 (10 HSPs)
chr8 (9-168)||(41505859-41506017)
chr8 (181-316)||(16052169-16052305)
chr8 (38-162)||(16052648-16052772)
chr8 (181-267)||(28074600-28074686)
chr8 (181-266)||(28260232-28260317)
chr8 (181-249)||(14424772-14424840)
chr8 (179-270)||(13530044-13530135)
chr8 (179-270)||(13619583-13619674)
chr8 (181-262)||(30543848-30543929)
chr8 (181-249)||(31436566-31436634)
[»] chr5 (4 HSPs)
chr5 (181-315)||(26070561-26070695)
chr5 (181-316)||(11274222-11274358)
chr5 (239-316)||(18178247-18178324)
chr5 (243-316)||(26329962-26330034)
[»] chr2 (9 HSPs)
chr2 (180-316)||(31450043-31450180)
chr2 (181-316)||(39730534-39730669)
chr2 (181-316)||(18236195-18236330)
chr2 (105-163)||(29769414-29769472)
chr2 (173-256)||(32703887-32703970)
chr2 (197-267)||(15454480-15454550)
chr2 (181-265)||(27417206-27417291)
chr2 (195-263)||(17415108-17415176)
chr2 (181-249)||(19541124-19541192)
[»] chr3 (6 HSPs)
chr3 (181-269)||(28206076-28206163)
chr3 (238-316)||(19219103-19219181)
chr3 (173-251)||(21813565-21813644)
chr3 (181-265)||(26387788-26387872)
chr3 (222-317)||(21829024-21829119)
chr3 (181-316)||(25188844-25188980)
[»] chr6 (8 HSPs)
chr6 (181-258)||(13835688-13835765)
chr6 (181-270)||(13830770-13830862)
chr6 (17-65)||(8322597-8322645)
chr6 (181-249)||(9943109-9943177)
chr6 (199-316)||(16439563-16439680)
chr6 (217-259)||(24968883-24968925)
chr6 (195-316)||(26499739-26499860)
chr6 (11-67)||(13831253-13831309)
[»] scaffold0011 (1 HSPs)
scaffold0011 (279-316)||(228079-228116)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 25706075 - 25706377
Alignment:
Q  11 taatactgattttgaatgaccgtttataattgcttcaaatacatagcaaggtacaattacataatgattgaagtgtgtagaatgtcttcaccaaccccac 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||| |||    
T  25706075 taatactgactttgaatgaccgtttataattgcttcaaatacatagcaaggcacaattacataatgactgaagtatgtagaatgtcttgaccaacctcac 25706174  T
Q  111 tgaatttaggatatacatgcatgtgtcttggaattgaacgtggttgaaagtataattaattatcttctctaatcatgcaactcaataggtgttttaagtc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    | |||||||| |||||| ||||||||| ||||||||||||||||    
T  25706175 tgaatttaggatatacatgcatgtgtcttggaattgaacgtggttgaaagta----tgattatcttttctaatgatgcaactccataggtgttttaagtc 25706270  T
Q  211 tttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaagacaatggttcttggaaggtttttgaag 310  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25706271 tttttgttgctaaatcttgtaattcggaaaaacaagacacctcatgaaggatcaagggatttaaagagtgaagacaatggttcttggaaggtttttgaag 25706370  T
Q  311 acaatat 317  Q
    |||||||    
T  25706371 acaatat 25706377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 2351083 - 2351185
Alignment:
Q  180 taatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 279  Q
    ||||||||| |||  |||||||| |||||||||||| |||||||||| |||||||||| |||| |||||| |  ||||| ||| || |||||| |||| |    
T  2351083 taatcatgcgactttataggtgtcttaagtctttttattgataaatcgtgtaattcagaaaaagaagacaacaaatgaaagatgaatggatttgaagaat 2351182  T
Q  280 gaa 282  Q
    |||    
T  2351183 gaa 2351185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 21471412 - 21471541
Alignment:
Q  33 tttataattgcttcaaatacatagcaaggtacaattacataatgattgaagtgtgtagaatgtcttcaccaaccccactgaatttaggatatacatgcat 132  Q
    |||| |||||||||||   |||||||||||||||| |||| | || || ||| ||   |||| ||| |||| ||||| || |||||||| | |||| |||    
T  21471412 tttagaattgcttcaatctcatagcaaggtacaatcacatgacgactggagtatggcaaatgccttgaccagccccattggatttaggagacacatacat 21471511  T
Q  133 gtgtcttggaattgaacgtggttgaaagta 162  Q
    || ||||||||||| |||||||||||||||    
T  21471512 gtatcttggaattgtacgtggttgaaagta 21471541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 24597031 - 24596963
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagaca 249  Q
    |||||||||||||  ||||||||||||||||||||  ||| ||||| ||||| || |||||||||||||    
T  24597031 aatcatgcaactccgtaggtgttttaagtctttttagtgagaaatcgtgtaaatcggcaaaacaagaca 24596963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 3268993 - 3268908
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaag 266  Q
    ||||||||||||   || |||||||||||||||||  ||| ||||| ||||| || ||||||||||| | | ||||||||||||||    
T  3268993 aatcatgcaacttcgtatgtgttttaagtctttttagtgagaaatcatgtaaatcggcaaaacaagatatcacatgaaggatcaag 3268908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 5214073 - 5214035
Alignment:
Q  207 agtctttttgttgataaatcttgtaattcagcaaaacaa 245  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  5214073 agtctttttattgataaatcatgtaattcagcaaaacaa 5214035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 5312810 - 5312752
Alignment:
Q  184 catgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaa 242  Q
    |||||||||| ||||||||||| |||||||||  ||||||||| ||||| || ||||||    
T  5312810 catgcaactccataggtgttttgagtctttttagtgataaatcatgtaaatcggcaaaa 5312752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 8309059 - 8308973
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagg 267  Q
    ||||||||||||| |||  |||||| |||||||||  | | ||||| ||||| |||||||||||||||| | | ||||| |||||||    
T  8309059 aatcatgcaactccatacatgttttgagtctttttagtaagaaatcatgtaaatcagcaaaacaagacatcacgtgaagaatcaagg 8308973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 7372593 - 7372508
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagt-ctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagg 267  Q
    ||||||||||||  ||||||||||| |||  |||||  ||| ||||||||||| |||||||| ||||| |  ||||||||||||||||    
T  7372593 aatcatgcaacttcataggtgttttcagtgttttttagtgagaaatcttgtaaatcagcaaatcaagata--tcatgaaggatcaagg 7372508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 15417001 - 15416866
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 280  Q
    ||||||||||||  ||||||||||| ||||||||| | |  ||||| |||||||| ||||| ||||||||| |||||||||||||||||| | |||| ||    
T  15417001 aatcatgcaactgtataggtgttttgagtctttttatagtcaaatcatgtaattcggcaaagcaagacaccacatgaaggatcaagggatatgaagaatg 15416902  T
Q  281 aaga-caatggttcttggaaggtttttgaagacaat 315  Q
    |||| |||||||||||  ||||||||| ||||||||    
T  15416901 aagatcaatggttcttataaggtttttaaagacaat 15416866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 13807782 - 13807678
Alignment:
Q  179 ctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagag 278  Q
    ||||||||||||||  |||| |||||| |||||||| |||| ||| |  |||||||||||||| ||||||| | ||||||||||||||| |||| ||||     
T  13807782 ctaatcatgcaacttcatagttgttttgagtcttttagttgttaagtgatgtaattcagcaaagcaagaca-cacatgaaggatcaaggtatttgaagaa 13807684  T
Q  279 tgaaga 284  Q
    ||||||    
T  13807683 tgaaga 13807678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 25727937 - 25727802
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 279  Q
    ||||||||||||||||||||||||| ||| |||| |  ||| ||||| ||||| ||  |||| ||| | | | |||||||||| |||| || | |||| |    
T  25727937 aatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacatgaaggattaagg-atatgaagatt 25727839  T
Q  280 gaaga-caatggttcttggaaggtttttgaagacaat 315  Q
    ||||| |||||||||||||||||||||||||||||||    
T  25727838 gaagatcaatggttcttggaaggtttttgaagacaat 25727802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 25736345 - 25736210
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 279  Q
    ||||||||||||||||||||||||| ||| |||| |  ||| ||||| ||||| ||  |||| ||| | | | |||||||||| |||| || | |||| |    
T  25736345 aatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacatgaaggattaagg-atatgaagatt 25736247  T
Q  280 gaaga-caatggttcttggaaggtttttgaagacaat 315  Q
    ||||| |||||||||||||||||||||||||||||||    
T  25736246 gaagatcaatggttcttggaaggtttttgaagacaat 25736210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 26102144 - 26102279
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 280  Q
    ||||||||||||| || |||||||| |||||||||  ||| | ||| || || ||  |||||||||||| | | |||| |||||| |||| | |||| ||    
T  26102144 aatcatgcaactccatgggtgttttgagtctttttagtgagatatcgtgcaaatcgacaaaacaagacatcacgtgaatgatcaa-ggatatgaagaatg 26102242  T
Q  281 aaga-caatggttcttggaaggtttttgaagacaata 316  Q
    |||| ||||| || || ||||||||||||||||||||    
T  26102243 aagatcaatgatttttagaaggtttttgaagacaata 26102279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 18795282 - 18795352
Alignment:
Q  195 ataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaa 265  Q
    ||||||||||| |||| ||||  ||| ||||| ||||| |||||||||||||||| | ||||| |||||||    
T  18795282 ataggtgttttgagtcattttagtgagaaatcgtgtaaatcagcaaaacaagacatcacatgatggatcaa 18795352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 52271268 - 52271137
Alignment:
Q  185 atgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga 284  Q
    ||||||||| |||| |||||| |||||||||  ||| ||||  ||||| || ||||||||| || || | ||||||||| ||| || | |||| |||||     
T  52271268 atgcaactccatagatgttttgagtctttttagtgagaaattatgtaaatcggcaaaacaaaacgccacgtgaaggatcgagg-atatgaagattgaagt 52271170  T
Q  285 -caatggttcttggaaggtttttgaagacaata 316  Q
     ||||||| ||| |||||| |||||||||||||    
T  52271169 tcaatggtacttagaaggtatttgaagacaata 52271137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 16442286 - 16442150
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 280  Q
    ||||||||||||| ||| ||||||| | |||||||  ||||||||| |||||||| | |||||| |||||  |||| ||||| ||||||||| || | ||    
T  16442286 aatcatgcaactccataagtgttttgactctttttaatgataaatcatgtaattcggtaaaacatgacactgcatggaggattaagggatttgaataatg 16442187  T
Q  281 aaga-caatggttcttggaaggtttttgaagacaata 316  Q
    |||| | || || ||||||||||||||||||||||||    
T  16442186 aagatcgattgtacttggaaggtttttgaagacaata 16442150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 31859928 - 31859793
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 280  Q
    ||||||||||||  ||||||||||| |||||||||  ||| ||||| ||||| ||||||||||||||||||   ||||||||| | |||| | || | ||    
T  31859928 aatcatgcaactgcataggtgttttgagtctttttagtgagaaatcatgtaaatcagcaaaacaagacaccaggtgaaggatcga-ggatatgaatattg 31859830  T
Q  281 aaga-caatggttcttggaaggtttttgaagacaata 316  Q
    |||| ||||||||||| |||||| |||||||||||||    
T  31859829 aagatcaatggttcttagaaggtatttgaagacaata 31859793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 20044264 - 20044340
Alignment:
Q  180 taatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatg 256  Q
    |||||||||||||| ||| || |||| ||||||||| |||| ||||| |||||||||| ||| ||||||||| ||||    
T  20044264 taatcatgcaactccatatgtattttgagtctttttattgaaaaatcatgtaattcagtaaagcaagacaccacatg 20044340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 30624951 - 30625056
Alignment:
Q  179 ctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagag 278  Q
    |||||||||||| |  ||||||||||| ||||||||| |||| ||||| ||||||||  ||||  |||||||  | || |||||||| |||||| ||||     
T  30624951 ctaatcatgcaatttcataggtgttttgagtctttttattgaaaaatcatgtaattctacaaagtaagacactgcgtggaggatcaaaggatttgaagaa 30625050  T
Q  279 tgaaga 284  Q
    ||||||    
T  30625051 tgaaga 30625056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 19601983 - 19602020
Alignment:
Q  279 tgaagacaatggttcttggaaggtttttgaagacaata 316  Q
    |||||||||||||||||  |||||||||||||||||||    
T  19601983 tgaagacaatggttcttaaaaggtttttgaagacaata 19602020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 41506017 - 41505859
Alignment:
Q  9 gataatactgattttgaatgaccgtttataattgcttcaaatacatagcaaggtacaattacataatgattgaagtgtgtagaatgtcttcaccaacccc 108  Q
    |||||| |||| ||| |||||  ||||| ||||||||||||| ||||||||  ||||||||||| | || ||| || || | |||| ||| |||| ||||    
T  41506017 gataatgctgactttaaatgaatgtttaaaattgcttcaaattcatagcaaaatacaattacattacgactgatgtctgca-aatgccttaaccatcccc 41505919  T
Q  109 actgaatttaggatatacatgcatgtgtcttggaattgaacgtggttgaaagtataatta 168  Q
    ||||| ||||||| |||||| | ||||| |||||||| || ||||||| ||| |||||||    
T  41505918 actgactttaggagatacatacgtgtgttttggaattaaatgtggttggaagcataatta 41505859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 16052305 - 16052169
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 279  Q
    ||||||||||||||||||||||||| ||| |||| |  ||| ||||| | ||| ||| |||| ||||||| | |||||||||| || |||| | |||| |    
T  16052305 aatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatctaaatcaacaaatcaagacatcacatgaaggat-aaaggatatgaagatt 16052207  T
Q  280 gaaga-caatggttcttggaaggtttttgaagacaata 316  Q
     |||| ||||| ||||| ||||||||||||||||||||    
T  16052206 aaagaccaatgattcttagaaggtttttgaagacaata 16052169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 16052772 - 16052648
Alignment:
Q  38 aattgcttcaaatacatagcaaggtacaattacataatgattgaagtgtgtagaatgtcttcaccaaccccactgaatttaggatatacatgcatgtgtc 137  Q
    |||||||||||   |||||||||||||||| |||| | ||||||||||||   |||| ||| ||||||||||||   |||||||  ||||| |  || ||    
T  16052772 aattgcttcaatctcatagcaaggtacaatcacatgacgattgaagtgtggcaaatgccttgaccaaccccactagctttaggaggtacatacgcgtatc 16052673  T
Q  138 ttggaattgaacgtggttgaaagta 162  Q
    ||||||||| | |||||||||||||    
T  16052672 ttggaattgtatgtggttgaaagta 16052648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 28074600 - 28074686
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagg 267  Q
    ||||||||||||| ||||||||||  |||||||||  ||| ||||| ||||| |  ||||||||||||| |  ||||||||||||||    
T  28074600 aatcatgcaactccataggtgtttcgagtctttttagtgagaaatcatgtaaatatgcaaaacaagacatcaaatgaaggatcaagg 28074686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 28260317 - 28260232
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaag 266  Q
    |||||||  |||| ||||||||||| |||||||||  ||| ||||| ||||| |||||||||||||||| | | || |||||||||    
T  28260317 aatcatgagactccataggtgttttgagtctttttagtgagaaatcatgtaaatcagcaaaacaagacatcacgtggaggatcaag 28260232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 14424840 - 14424772
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagaca 249  Q
    ||||||||||||| |||||||||||| || |||||  ||| ||||| ||||| || |||||||||||||    
T  14424840 aatcatgcaactccataggtgttttaggtttttttagtgagaaatcatgtaaatcggcaaaacaagaca 14424772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 13530135 - 13530044
Alignment:
Q  179 ctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggat 270  Q
    ||||||||||||||| ||| || |||||||  ||||| |||| ||||| ||||| || | ||| |||||||||  || ||||||||||||||    
T  13530135 ctaatcatgcaactccatatgtattttaagcttttttattgaaaaatcatgtaaatcggtaaagcaagacaccatataaaggatcaagggat 13530044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 13619674 - 13619583
Alignment:
Q  179 ctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggat 270  Q
    ||||||||||||||| ||| || |||||||  ||||| |||| ||||| ||||| || | ||| |||||||||  || ||||||||||||||    
T  13619674 ctaatcatgcaactccatatgtattttaagcttttttattgaaaaatcatgtaaatcggtaaagcaagacaccatataaaggatcaagggat 13619583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 30543848 - 30543929
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggat 262  Q
    |||||||||| |  ||||||||||| |||||||||| ||| ||||| ||||| || | ||||||||| | | ||||||||||    
T  30543848 aatcatgcaattatataggtgttttgagtctttttggtgagaaatcatgtaaatcggtaaaacaagatatcacatgaaggat 30543929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 31436566 - 31436634
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagaca 249  Q
    ||||||||||||  ||||||||||| | |||||||  ||| ||||| ||||| ||| ||||||||||||    
T  31436566 aatcatgcaactacataggtgttttgaatctttttagtgagaaatcatgtaaatcaacaaaacaagaca 31436634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 315
Target Start/End: Original strand, 26070561 - 26070695
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 280  Q
    ||||||||||||| ||| ||||||| |||||||||  ||| ||||| ||||| |  ||||||||||||| | ||||||||||||| |||| | |||| ||    
T  26070561 aatcatgcaactccataagtgttttgagtctttttagtgagaaatcatgtaaattggcaaaacaagacatcacatgaaggatcaa-ggatatgaagattg 26070659  T
Q  281 aaga-caatggttcttggaaggtttttgaagacaat 315  Q
    |||| | ||||||| |  ||||||||||||||||||    
T  26070660 aagatctatggttcgtataaggtttttgaagacaat 26070695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 11274358 - 11274222
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 279  Q
    ||||||||||||| ||||||||||| ||| |||| |  | | ||||| ||||  ||  |||| ||||||| | ||||||||||||||| || | |||| |    
T  11274358 aatcatgcaactccataggtgttttgagtgttttgtagtaagaaatcatgtatatcgacaaatcaagacatcacatgaaggatcaagg-atatgaagatt 11274260  T
Q  280 gaagac-aatggttcttggaaggtttttgaagacaata 316  Q
    |||||| |||||||||| |||||| |||||||||||||    
T  11274259 gaagaccaatggttcttagaaggtctttgaagacaata 11274222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 18178247 - 18178324
Alignment:
Q  239 aaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttggaaggtttttgaagacaata 316  Q
    ||||||||||||| ||||||||||| | |||| | |||| |||||| |||| ||||||||||||| |||||||| ||||    
T  18178247 aaaacaagacaccgcatgaaggatcga-ggatatgaagattgaagaccaattgttcttggaaggtctttgaagataata 18178324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 26330034 - 26329962
Alignment:
Q  243 caagacacctcatgaaggatcaagggatttaaagagtgaagacaatggttcttggaaggtttttgaagacaata 316  Q
    ||||||| | ||||||||||||| |||| | |||| ||||| ||||||| ||| |||||||||| |||||||||    
T  26330034 caagacatcacatgaaggatcaa-ggatatgaagattgaagtcaatggtccttagaaggttttttaagacaata 26329962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 316
Target Start/End: Original strand, 31450043 - 31450180
Alignment:
Q  180 taatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 279  Q
    |||| ||||||||  ||||||||||| ||| ||||| |||||||||| ||| |||| |||||  |||||||||  |||| ||||||||||||| |||| |    
T  31450043 taattatgcaactttataggtgttttgagtatttttattgataaatcatgtgattcggcaaagaaagacaccttgtgaaagatcaagggatttcaagaat 31450142  T
Q  280 gaaga-caatggttcttggaaggtttttgaagacaata 316  Q
    ||| | ||||| | |||  ||||||| |||||||||||    
T  31450143 gaatatcaatgttacttaaaaggtttctgaagacaata 31450180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 39730534 - 39730669
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 280  Q
    |||||||||||||   ||||||||| ||| |||||  ||| ||||| | ||| |||||||||||||||| | |||||||||||||||||| | |||| ||    
T  39730534 aatcatgcaactctgcaggtgttttgagtatttttagtgagaaatcatataaatcagcaaaacaagacatcacatgaaggatcaagggatatgaaga-tg 39730632  T
Q  281 aagac-aatggttcttggaaggtttttgaagacaata 316  Q
    ||||| |||  ||||| ||||  ||||||||||||||    
T  39730633 aagactaatatttcttagaagaattttgaagacaata 39730669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 18236330 - 18236195
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 280  Q
    ||||||||||||| ||| || |||| |||||||||  ||| ||||| ||||| || ||||||||||||| | ||||||||||| |   || | |||| ||    
T  18236330 aatcatgcaactccataagtattttgagtctttttagtgagaaatcatgtaactcggcaaaacaagacatcacatgaaggatc-acaaatatgaagattg 18236232  T
Q  281 aa-gacaatggttcttggaaggtttttgaagacaata 316  Q
    || | ||||||||||| ||||||| ||||||||||||    
T  18236231 aaggccaatggttcttagaaggttgttgaagacaata 18236195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 29769414 - 29769472
Alignment:
Q  105 ccccactgaatttaggatatacatgcatgtgtcttggaattgaacgtggttgaaagtat 163  Q
    ||||||||| ||||||| |||||| ||||||| ||||||||||| || |||||||||||    
T  29769414 ccccactgattttaggagatacatacatgtgttttggaattgaatgtagttgaaagtat 29769472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 32703970 - 32703887
Alignment:
Q  173 tcttctctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatg 256  Q
    ||||||||||  || |||||  ||| ||||||| | ||||||| |||||||||  |||||||| ||||||||||||| ||||||    
T  32703970 tcttctctaactatacaacttcataagtgttttgaatctttttattgataaattatgtaattccgcaaaacaagacatctcatg 32703887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 15454550 - 15454480
Alignment:
Q  197 aggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagg 267  Q
    ||||||||| ||| |||||  ||| ||||| ||||| | |||||||||||||| | |||||||||||||||    
T  15454550 aggtgttttgagtttttttagtgagaaatcgtgtaaattagcaaaacaagacatcacatgaaggatcaagg 15454480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 27417291 - 27417206
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaa 265  Q
    ||||||||||||| ||||||||||||||| |||| |  ||| ||||| ||||| ||  |||| ||||||| | |||||||||||||    
T  27417291 aatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacatgaaggatcaa 27417206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 17415176 - 17415108
Alignment:
Q  195 ataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatc 263  Q
    ||||||||||| |||||||||  ||| ||||| ||||| || ||||||||||||| | | |||||||||    
T  17415176 ataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaacaagacatcacgtgaaggatc 17415108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 19541124 - 19541192
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagaca 249  Q
    ||||||||||||| ||||||||||| ||||||| |  ||| ||||| ||||| || |||||| ||||||    
T  19541124 aatcatgcaactccataggtgttttgagtctttctagtgagaaatcatgtaaatcggcaaaataagaca 19541192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 28206163 - 28206076
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaaggga 269  Q
    ||||||||||||  ||| ||||||| |  |||||| || ||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  28206163 aatcatgcaacttcataagtgttttgaa-ctttttctttataaatcgtgtaattcggcaaaacaagacaccacatgaaggatcaaggga 28206076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 19219181 - 19219103
Alignment:
Q  238 caaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttggaaggtttttgaagacaata 316  Q
    |||| ||||||| | ||||||||||||||| || | |||| |||||| ||||||||||| ||||||||||||||||||||    
T  19219181 caaaccaagacatcacatgaaggatcaagg-atatgaagattgaagatcaatggttcttagaaggtttttgaagacaata 19219103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 21813565 - 21813644
Alignment:
Q  173 tcttctctaatcatgcaactcaataggtgttttaagtctttttg-ttgataaatcttgtaattcagcaaaacaagacacc 251  Q
    ||||| ||| ||||||||||  |||||| |||| |||||||||  |||||||| | ||||||||||||||||||||||||    
T  21813565 tcttccctagtcatgcaactacataggtattttgagtcttttttattgataaaccatgtaattcagcaaaacaagacacc 21813644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 26387872 - 26387788
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaa 265  Q
    ||||||||||||| |||| |||||| |||||||||  ||| ||||| ||||| ||||| |||||||||| |   |||||||||||    
T  26387872 aatcatgcaactccatagatgttttgagtctttttaatgagaaatcatgtaaatcagctaaacaagacatcaagtgaaggatcaa 26387788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 317
Target Start/End: Complemental strand, 21829119 - 21829024
Alignment:
Q  222 aaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttggaaggtttttgaagacaatat 317  Q
    ||||||||||| ||  | |||||||||| | ||||||| ||||||| || | |||| |||||| ||||||||| | |||||| ||||||||||||||    
T  21829119 aaatcttgtaaatcgtcgaaacaagacatcacatgaagtatcaagg-atatgaagattgaagatcaatggttcatcgaaggtctttgaagacaatat 21829024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 25188844 - 25188980
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 280  Q
    ||||||||||||| |||  | |||| || | |||||||| |||||| || || |||| ||| ||||||| | || |||||||||||| || | |||| ||    
T  25188844 aatcatgcaactccatatatattttgagccgttttgttgttaaatcatgaaaatcagtaaagcaagacatcacaagaaggatcaaggaatatgaagaatg 25188943  T
Q  281 aaga-caatggttcttggaaggtttttgaagacaata 316  Q
    || | |||||||||||   |||||||| |||||||||    
T  25188944 aatatcaatggttcttaagaggttttttaagacaata 25188980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 13835688 - 13835765
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaa 258  Q
    |||||||||  || ||| ||||||||||||||||| ||||||||||||||||||| ||||| | ||| ||| ||||||    
T  13835688 aatcatgcagttccatatgtgttttaagtctttttattgataaatcttgtaattcggcaaacctagaaaccacatgaa 13835765  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 13830862 - 13830770
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaa---tcttgtaattcagcaaaacaagacacctcatgaaggatcaagggat 270  Q
    |||||||||  || ||||||| ||| ||||||||||||||||||   ||||||||||  ||||| ||||||||| |||||| || ||||||||    
T  13830862 aatcatgcagttccataggtgatttgagtctttttgttgataaatattcttgtaatttggcaaaccaagacaccacatgaatgaacaagggat 13830770  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 8322597 - 8322645
Alignment:
Q  17 tgattttgaatgaccgtttataattgcttcaaatacatagcaaggtaca 65  Q
    |||||||||||| ||||||| ||||| ||||||| ||||||||||||||    
T  8322597 tgattttgaatgtccgtttagaattgtttcaaattcatagcaaggtaca 8322645  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 9943177 - 9943109
Alignment:
Q  181 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagaca 249  Q
    ||||||||||||| ||||||||||| ||| ||||| |||| ||||| ||||| || | |||||||||||    
T  9943177 aatcatgcaactccataggtgtttttagtatttttattgagaaatcatgtaaatcggaaaaacaagaca 9943109  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 316
Target Start/End: Original strand, 16439563 - 16439680
Alignment:
Q  199 gtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttgg 297  Q
    ||||||| |||||||||  ||| ||||| ||||| |||| ||||||||||| |  ||||| |||| |||||| | |||| |||||| ||||||||||| |    
T  16439563 gtgttttgagtctttttagtgagaaatcatgtaaatcagaaaaacaagacatcagatgaaagatc-agggatatgaagaatgaagatcaatggttcttag 16439661  T
Q  298 aaggtttttgaagacaata 316  Q
    || | ||||||||| ||||    
T  16439662 aatggttttgaagaaaata 16439680  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 24968883 - 24968925
Alignment:
Q  217 ttgataaatcttgtaattcagcaaaacaagacacctcatgaag 259  Q
    |||| ||||| |||||||||||||| |||||||||||||||||    
T  24968883 ttgaaaaatcatgtaattcagcaaagcaagacacctcatgaag 24968925  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 316
Target Start/End: Complemental strand, 26499860 - 26499739
Alignment:
Q  195 ataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttc 293  Q
    ||||||||| | ||| |||||  ||| ||||| || || || ||||||||||| ||| | |||| |||| ||| || | |||| |||||| |||||||||    
T  26499860 ataggtgttatgagtgtttttagtgagaaatcatgcaaatcggcaaaacaagataccacgtgaaagatcgagg-atatgaagattgaagatcaatggttc 26499762  T
Q  294 ttggaaggtttttgaagacaata 316  Q
    || ||||||||||||||||||||    
T  26499761 ttagaaggtttttgaagacaata 26499739  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 13831309 - 13831253
Alignment:
Q  11 taatactgattttgaatgaccgtttataattgcttcaaatacatagcaaggtacaat 67  Q
    ||||| ||| ||||||||| |||||||||||||||||||| || | | |||||||||    
T  13831309 taatattgactttgaatgaacgtttataattgcttcaaattcaaaaccaggtacaat 13831253  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 228116 - 228079
Alignment:
Q  279 tgaagacaatggttcttggaaggtttttgaagacaata 316  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  228116 tgaagacaatggttcttagaaggtatttgaagacaata 228079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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