View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_68 (Length: 338)

Name: NF0925_low_68
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_68
NF0925_low_68
[»] chr1 (3 HSPs)
chr1 (123-292)||(49095015-49095180)
chr1 (261-296)||(48669692-48669727)
chr1 (270-300)||(36781076-36781106)
[»] chr6 (1 HSPs)
chr6 (267-300)||(2390106-2390139)
[»] chr5 (1 HSPs)
chr5 (270-300)||(28078309-28078339)
[»] chr3 (2 HSPs)
chr3 (270-300)||(28775382-28775412)
chr3 (264-300)||(21656327-21656363)
[»] chr8 (2 HSPs)
chr8 (267-300)||(43468904-43468937)
chr8 (272-300)||(13797295-13797323)
[»] chr4 (1 HSPs)
chr4 (267-300)||(50276431-50276464)
[»] chr7 (2 HSPs)
chr7 (272-300)||(7335876-7335904)
chr7 (268-296)||(30972211-30972239)
[»] chr2 (2 HSPs)
chr2 (272-300)||(31214113-31214141)
chr2 (272-300)||(42630169-42630197)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 292
Target Start/End: Complemental strand, 49095180 - 49095015
Alignment:
Q  123 agggaaaataaaatgaatgtaaacagtgaaatgtgatggaatagaaaccactccnnnnnnnnnnnnnnnnnnatatccaaataatggaatatcattccat 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||                  |||||||||    ||||||||||| |||    
T  49095180 agggaaaataaaatgaatgtaaacagtgtaatgtgatggaatagaaaccactcctttttattttatttttttatatccaaa----ggaatatcatttcat 49095085  T
Q  223 ttcactcactctgatacactatcaataaaacttctatttattatatattaggtcaaatgcatctaaaggt 292  Q
    |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49095084 ttcattcactctgttatactatcaataaaacttctatttattatatattaggtcaaatgcatccaaaggt 49095015  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 48669727 - 48669692
Alignment:
Q  261 tattatatattaggtcaaatgcatctaaaggtcttt 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  48669727 tattatttattaggtcaaatgcatctaaaggtcttt 48669692  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 300
Target Start/End: Original strand, 36781076 - 36781106
Alignment:
Q  270 ttaggtcaaatgcatctaaaggtcttttaag 300  Q
    |||||||||||||||||||||||||||||||    
T  36781076 ttaggtcaaatgcatctaaaggtcttttaag 36781106  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 2390106 - 2390139
Alignment:
Q  267 atattaggtcaaatgcatctaaaggtcttttaag 300  Q
    ||||||||||||||||||||||||||||||||||    
T  2390106 atattaggtcaaatgcatctaaaggtcttttaag 2390139  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 300
Target Start/End: Original strand, 28078309 - 28078339
Alignment:
Q  270 ttaggtcaaatgcatctaaaggtcttttaag 300  Q
    |||||||||||||||||||||||||||||||    
T  28078309 ttaggtcaaatgcatctaaaggtcttttaag 28078339  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 300
Target Start/End: Original strand, 28775382 - 28775412
Alignment:
Q  270 ttaggtcaaatgcatctaaaggtcttttaag 300  Q
    |||||||||||||||||||||||||||||||    
T  28775382 ttaggtcaaatgcatctaaaggtcttttaag 28775412  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 21656327 - 21656363
Alignment:
Q  264 tatatattaggtcaaatgcatctaaaggtcttttaag 300  Q
    |||||| | ||||||||||||||||||||||||||||    
T  21656327 tatataattggtcaaatgcatctaaaggtcttttaag 21656363  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 43468904 - 43468937
Alignment:
Q  267 atattaggtcaaatgcatctaaaggtcttttaag 300  Q
    ||||||||||||||||||||||||||| ||||||    
T  43468904 atattaggtcaaatgcatctaaaggtcctttaag 43468937  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 13797323 - 13797295
Alignment:
Q  272 aggtcaaatgcatctaaaggtcttttaag 300  Q
    |||||||||||||||||||||||||||||    
T  13797323 aggtcaaatgcatctaaaggtcttttaag 13797295  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 50276464 - 50276431
Alignment:
Q  267 atattaggtcaaatgcatctaaaggtcttttaag 300  Q
    ||||||||||||||||||||||||||| ||||||    
T  50276464 atattaggtcaaatgcatctaaaggtcctttaag 50276431  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 300
Target Start/End: Original strand, 7335876 - 7335904
Alignment:
Q  272 aggtcaaatgcatctaaaggtcttttaag 300  Q
    |||||||||||||||||||||||||||||    
T  7335876 aggtcaaatgcatctaaaggtcttttaag 7335904  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 296
Target Start/End: Complemental strand, 30972239 - 30972211
Alignment:
Q  268 tattaggtcaaatgcatctaaaggtcttt 296  Q
    |||||||||||||||||||||||||||||    
T  30972239 tattaggtcaaatgcatctaaaggtcttt 30972211  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 31214141 - 31214113
Alignment:
Q  272 aggtcaaatgcatctaaaggtcttttaag 300  Q
    |||||||||||||||||||||||||||||    
T  31214141 aggtcaaatgcatctaaaggtcttttaag 31214113  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 42630197 - 42630169
Alignment:
Q  272 aggtcaaatgcatctaaaggtcttttaag 300  Q
    |||||||||||||||||||||||||||||    
T  42630197 aggtcaaatgcatctaaaggtcttttaag 42630169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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