View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_78 (Length: 322)
Name: NF0925_low_78
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 1006735 - 1006521
Alignment:
| Q |
20 |
cataggttgtggctacaagaattaaagttgtatgaaggtatgagtttggacgtgggtattttaaaaaatatgggtataaggaaaaatagtgtaatatttt |
119 |
Q |
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| T |
1006735 |
cataggttgtggctacaagaattaaagttgtatgaaggtatgggtttggacgcgggtattttaaaaaatatgggtataaggacaaatagtgtaatatttt |
1006636 |
T |
|
| Q |
120 |
atatagatcctaccaattgatatccctatatgatatttcccttttttaatgaacaaaagggggataacctgaagaaacaaaattataaacctctagcaaa |
219 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
1006635 |
atatagatcctaccaattcatatccctatatgatatttccctttttttatgaacaaaagggggataacccgaagaaacgaaattataaacctctagcaaa |
1006536 |
T |
|
| Q |
220 |
tagggtactttaatt |
234 |
Q |
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|||||||||||||| |
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| T |
1006535 |
cagggtactttaatt |
1006521 |
T |
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