View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_81 (Length: 317)

Name: NF0925_low_81
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_81
NF0925_low_81
[»] chr3 (2 HSPs)
chr3 (120-301)||(27302626-27302807)
chr3 (30-71)||(27302304-27302345)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 120 - 301
Target Start/End: Original strand, 27302626 - 27302807
Alignment:
Q  120 aattgattggtatagtcaatagtgttatggtcggagaaattcacatttattcgtagatgatgttgtgctcaacatgggtgtggcatttttccctatataa 219  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27302626 aattgattggtatagtcaatagtgttatggtcggagacattcacatttattcgtagatgatgttgtgctcaacatgggtgtggcatttttccctatataa 27302725  T
Q  220 aatacagcttctagacatgtattgctacactgttatgtgtcatttctaatgttgatcaattacaaatatttcatcactatta 301  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27302726 aatacagcttctaaacatgtattgctacactgttatgtgtcatttctaatgttgatcaattacaaatatttcatcactatta 27302807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 27302304 - 27302345
Alignment:
Q  30 ctctgctgacatggtcatggggatggtgaccgatttatagag 71  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27302304 ctctgctgacatggtcatggggatggtgaccgatttatagag 27302345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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