View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_82 (Length: 316)

Name: NF0925_low_82
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_82
NF0925_low_82
[»] chr1 (3 HSPs)
chr1 (9-234)||(19477765-19477992)
chr1 (158-215)||(45280857-45280914)
chr1 (247-287)||(46424154-46424194)
[»] chr7 (2 HSPs)
chr7 (139-194)||(6440360-6440415)
chr7 (77-149)||(6440271-6440347)
[»] chr4 (2 HSPs)
chr4 (247-287)||(9452967-9453007)
chr4 (153-194)||(54053093-54053134)
[»] chr5 (1 HSPs)
chr5 (77-127)||(3171822-3171870)
[»] chr3 (1 HSPs)
chr3 (176-220)||(9682731-9682775)
[»] chr2 (1 HSPs)
chr2 (153-205)||(13558973-13559025)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 19477992 - 19477765
Alignment:
Q  9 gatatgaagcaaaaaggaaaatgcattcagacatttgaacaaaca--tgatatccaatccaattacatgaaacaaaagcatcaattttttaacattccga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19477992 gatatgaagcaaaaaggaaaatgcattcagacatttgaacaaacagctgatatccaatccaattacatgaaacaaaagcatcaattttttaacattccga 19477893  T
Q  107 aattccaattctaactaacaaacaacttggtcataacaaaatttcatttccaattcccaattttgaaaccctaaaacaagaaattggaaaatcaattggc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19477892 aattccaattctaactaacaaacaacttggtcataacaaaatttcatttccaattcccaattttgaaacactaaaacaagaaattggaaaatcaattggc 19477793  T
Q  207 ttaccttagagtgaataatgacaactga 234  Q
    ||||||||||||||||||||||||||||    
T  19477792 ttaccttagagtgaataatgacaactga 19477765  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 45280914 - 45280857
Alignment:
Q  158 aattcccaattttgaaaccctaaaacaagaaattggaaaatcaattggcttaccttag 215  Q
    ||||||||||| ||||||||||||||| | ||||||| ||| ||||||||||||||||    
T  45280914 aattcccaattctgaaaccctaaaacaggcaattggagaatgaattggcttaccttag 45280857  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 46424194 - 46424154
Alignment:
Q  247 tgttgctcttttaagatgaagcggtgaattcattaaatata 287  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  46424194 tgttgctcttttaagatgaagcgatgaattcattaaatata 46424154  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 6440360 - 6440415
Alignment:
Q  139 ataacaaaatttcatttccaattcccaattttgaaaccctaaaacaagaaattgga 194  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||    
T  6440360 ataacaaaattccatttccaattctcaattttgaaaccctaaaacaagcaattgga 6440415  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 6440271 - 6440347
Alignment:
Q  77 aacaaaagcatcaattttttaacattccgaaattccaattctaacta----acaaacaacttggtcataacaaaatt 149  Q
    |||||||||||||| ||| ||||||||  ||||||||||||||||||    |||||||||||| ||||||| |||||    
T  6440271 aacaaaagcatcaactttctaacattctaaaattccaattctaactaactgacaaacaacttgttcataacgaaatt 6440347  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 9453007 - 9452967
Alignment:
Q  247 tgttgctcttttaagatgaagcggtgaattcattaaatata 287  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  9453007 tgttgctcttttaagatgaagcggtaaattcattaaatata 9452967  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 54053134 - 54053093
Alignment:
Q  153 tttccaattcccaattttgaaaccctaaaacaagaaattgga 194  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  54053134 tttcaaattcccaattttaaaaccctaaaacaagaaattgga 54053093  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 3171870 - 3171822
Alignment:
Q  77 aacaaaagcatcaattttttaacattccgaaattccaattctaactaacaa 127  Q
    |||||||||||||| ||| |||||||||  |||||||||||||||||||||    
T  3171870 aacaaaagcatcaactttctaacattcc--aattccaattctaactaacaa 3171822  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 9682731 - 9682775
Alignment:
Q  176 cctaaaacaagaaattggaaaatcaattggcttaccttagagtga 220  Q
    ||||||||||| ||||||| ||| |||||| ||||||||||||||    
T  9682731 cctaaaacaagcaattggagaatgaattgggttaccttagagtga 9682775  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 13558973 - 13559025
Alignment:
Q  153 tttccaattcccaattttgaaaccctaaaacaagaaattggaaaatcaattgg 205  Q
    ||||| |||||||||| | ||||||||||||||| ||||||| |||| |||||    
T  13558973 tttcctattcccaattctaaaaccctaaaacaagcaattggagaatcgattgg 13559025  T

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