View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_88 (Length: 305)

Name: NF0925_low_88
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_88
NF0925_low_88
[»] chr8 (15 HSPs)
chr8 (31-266)||(4889723-4889954)
chr8 (31-152)||(10452496-10452613)
chr8 (31-147)||(10446848-10446960)
chr8 (31-155)||(4776436-4776556)
chr8 (31-117)||(4681473-4681559)
chr8 (31-170)||(4924849-4924984)
chr8 (31-160)||(4689104-4689229)
chr8 (31-154)||(4745834-4745953)
chr8 (31-154)||(21439303-21439422)
chr8 (31-155)||(4736828-4736947)
chr8 (31-147)||(4913378-4913490)
chr8 (31-101)||(4996410-4996480)
chr8 (55-117)||(4703784-4703846)
chr8 (33-155)||(4726274-4726391)
chr8 (55-119)||(4904413-4904477)
[»] chr3 (1 HSPs)
chr3 (206-246)||(2131532-2131572)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 31 - 266
Target Start/End: Complemental strand, 4889954 - 4889723
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||  |    ||| ||    
T  4889954 attcaacccttccaccaatcctcaatgcctttgagatttataaagtaaaagacttctcacaatcagaaactcatcaggatgatggtaagt----tagtcc 4889859  T
Q  131 tttagtttatttgaaaaccatactatcttcatccctaaatataaaaatcttttggtatattttcaactgcattctataataatcactacgatgaaaacat 230  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  4889858 tttagtttatatgaaaaccatactatcttcatccctaaatataacaatcttttggtatattttcaactgcattctataacaacgactacgatgaaaacat 4889759  T
Q  231 aaactaattctctctcatggatggttgtaaaacatt 266  Q
    ||||||||||||| ||||  ||||||||||||||||    
T  4889758 aaactaattctctttcatatatggttgtaaaacatt 4889723  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 10452496 - 10452613
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||  | |||||||  |||||||||||||||  ||    |||||    
T  10452496 attcaacccttccacccatcctcaatgccattaaaatttataaagtaaaagacttctcaaaaccagaaacagaacaagatgatggtaagta----agccc 10452591  T
Q  131 tttagtttatttgaaaaccata 152  Q
    ||||||||||||||||| ||||    
T  10452592 tttagtttatttgaaaaacata 10452613  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 10446848 - 10446960
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| |||||||| ||| || |||||||||| |||||||||||||||||||||||||   |||||||| |||||||||||||||     || |||||    
T  10446848 attcaacccttccaccaatcgtcaatgccattgaaatttataaagtaaaagacttctcacagccagaaactaaacaagatgatggtaa----gcaagccc 10446943  T
Q  131 tttagtttatttgaaaa 147  Q
    |||||||||||||||||    
T  10446944 tttagtttatttgaaaa 10446960  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 4776556 - 4776436
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| ||||||||||||||  ||||| ||||||||||||  | |||||||||||||| || |||||||||||| ||||||||||     |||||  |    
T  4776556 attcaacccttccacccatcctaaatgcctttgagatttatatggcaaaagacttctcacaattagaaactcaacaggatgatggtaa----gctaggac 4776461  T
Q  131 tttagtttatttgaaaaccatacta 155  Q
    ||||||||||||||||| |||||||    
T  4776460 tttagtttatttgaaaaacatacta 4776436  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 4681473 - 4681559
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggta 117  Q
    ||||||| ||||||||||||||  ||||| ||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||    
T  4681473 attcaacccttccacccatcctgaatgccgttgaggtttataaagtaaaaaatttctcacaatcagaaactcaacaggatgatggta 4681559  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 4924984 - 4924849
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| ||||||||||||||| |||||  |||| |||||||||||||| | |||| || | ||||||||||||||||||||||    || ||||||||    
T  4924984 attcaacccttccacccatcctcaatgcctatgaggtttataaagtaaaacaattcttacaaccagaaactcaacaagatgatgg----taagctagccc 4924889  T
Q  131 tttagtttatttgaaaaccatactatcttcatccctaaat 170  Q
    | |||||||| | || | |||||||||| | |||||||||    
T  4924888 tctagtttatctcaacaacatactatctacgtccctaaat 4924849  T

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Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 4689104 - 4689229
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| |||||||| |||||| |||||  |||| ||||||||||||  |||||| ||| |||||||||| |||||||||||||    || || | |||    
T  4689104 attcaacccttccaccaatcctcaatgcctatgaggtttataaagtaatggacttcccacaatcagaaactgaacaagatgatgg----taagcaatccc 4689199  T
Q  131 tttagtttatttgaaaaccatactatcttc 160  Q
    ||||||||||||||||| ||||||| ||||    
T  4689200 tttagtttatttgaaaaacatactaccttc 4689229  T

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Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 4745834 - 4745953
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| |||||||| |||||| |||||  |||| ||||| |  ||| ||||||||||  |||||||||||||||||||||||    ||| ||||||||    
T  4745834 attcaacccttccaccaatcctcaatgcctatgaggtttattagctaagagacttctcaaaatcagaaactcaacaagatgatg----ataagctagccc 4745929  T
Q  131 tttagtttatttgaaaaccatact 154  Q
     |||||||||||||||| ||||||    
T  4745930 attagtttatttgaaaaacatact 4745953  T

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Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 21439422 - 21439303
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| ||||||||||||||  ||||  ||||||||||||  | ||||| |||||||| ||||||||||||||| ||||||||||     ||| || |    
T  21439422 attcaacccttccacccatcctaaatgcatttgagatttatatgggaaaagtcttctcacaatcagaaactcaacaggatgatggtaa----gctggctc 21439327  T
Q  131 tttagtttatttgaaaaccatact 154  Q
    ||||||||||||||||| ||||||    
T  21439326 tttagtttatttgaaaaacatact 21439303  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 4736828 - 4736947
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| ||||||||||||||  ||||  ||||| ||||||||  || ||||||||||  ||||||||||||||||||||||||    || ||||||||    
T  4736828 attcaacccttccacccatcctgaatgcttttgaggtttataaacaaagagacttctcaatatcagaaactcaacaagatgatgg----taagctagccc 4736923  T
Q  131 tttagtttatttgaaaaccatacta 155  Q
    ||| ||||| ||||||| |||||||    
T  4736924 ttt-gtttaattgaaaaacatacta 4736947  T

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Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 4913490 - 4913378
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccc 130  Q
    ||||||| ||||||||||||||  ||||| |||||||||| |    |||||||||||||| ||||||||||||||| ||||||||||     ||| ||||    
T  4913490 attcaacccttccacccatcctaaatgcctttgagatttacatgtcaaaagacttctcacaatcagaaactcaacaggatgatggtaa----gctggccc 4913395  T
Q  131 tttagtttatttgaaaa 147  Q
    |||||||||| ||||||    
T  4913394 tttagtttatctgaaaa 4913378  T

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Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 4996410 - 4996480
Alignment:
Q  31 attcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaact 101  Q
    ||||||| |||||||| |||||| ||||| |||| ||||||||||||||| ||||||||| ||||||||||    
T  4996410 attcaacccttccaccaatcctcaatgcctttgaaatttataaagtaaaaaacttctcacaatcagaaact 4996480  T

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Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 4703784 - 4703846
Alignment:
Q  55 atgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggta 117  Q
    |||| |||||| ||||||||||||||||||||||||  ||||||||||| || ||||||||||    
T  4703784 atgctattgaggtttataaagtaaaagacttctcacagtcagaaactcatcaggatgatggta 4703846  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 4726274 - 4726391
Alignment:
Q  33 tcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtatatatgctagccctt 132  Q
    ||||| |||||||| |||||| ||||| ||||| | |||||| ||||||||||||| |  |||||||||||||| | ||||||    || ||||||||||    
T  4726274 tcaacccttccaccaatcctcaatgcctttgaggtatataaactaaaagacttctcgcattcagaaactcaacagggtgatgg----taagctagccctt 4726369  T
Q  133 tagtttatttgaaaaccatacta 155  Q
    | ||||| ||||||| |||||||    
T  4726370 t-gtttaattgaaaaacatacta 4726391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 4904477 - 4904413
Alignment:
Q  55 atgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtata 119  Q
    ||||| |||||||||| || | ||||||||||  || |||||||||| | |||||||||||||||    
T  4904477 atgcctttgagatttacaaggcaaaagacttcatacaatcagaaactgatcaagatgatggtata 4904413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 2131572 - 2131532
Alignment:
Q  206 ataataatcactacgatgaaaacataaactaattctctctc 246  Q
    |||||||  |||| |||||||||||||||||||||||||||    
T  2131572 ataataaatactatgatgaaaacataaactaattctctctc 2131532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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