View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_9 (Length: 627)
Name: NF0925_low_9
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_9 |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 88 - 619
Target Start/End: Original strand, 32851068 - 32851599
Alignment:
| Q |
88 |
atcggtatagccaaccaactcattgttttcttccttcacatacttgatcccaagcttctttgttccttggagatagcgcaaaatcctttttgctgctgca |
187 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32851068 |
atcggtatagccaaccaactcattgttttcttccttcacatactttatcccaagcttctttgttccttggagatagcgcaaaatcctttttgctgctgca |
32851167 |
T |
|
| Q |
188 |
aaatgaagcttacttggctcattcatgaatctagaaaccaaactaactgaatgcactatatcaggccttgtattcgtgagataaatcaaggaaccaacga |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32851168 |
aaatgaagcttacttggctcattcatgaatctagaaaccaaactaactgaatgcactatatctggccttgtattcgtgagataaatcaaggaaccaacga |
32851267 |
T |
|
| Q |
288 |
ggcttctgtaggcttttggatctgccttttctgaaccatcattcagctgcaacttttcatttaaggccattggggttgagactggtttgcagctctccaa |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32851268 |
ggcttctgtaggcttttggatctgccttttctgaaccatcattcagctgcaacttttcatttaaggccattggggttgagactggtttgcagctctccaa |
32851367 |
T |
|
| Q |
388 |
tctgaactttttaagcaaatcatgaatgtatttttcttgtgtgataaaaatctcgccttttatttgcttcacttgaattccaagaaagtatttcattaat |
487 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32851368 |
tctgaactttttaagcaaatcatgaatgtatttttcttgtgtgataaaaatctcgcattttgtttgcttcacttgaattccaagaaagtatttcattaat |
32851467 |
T |
|
| Q |
488 |
ccaaggtctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgcataaattaaatcatcaacatagagac |
587 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32851468 |
ccaagatctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgcataaattaaatcatcaacatagagac |
32851567 |
T |
|
| Q |
588 |
aaaccatcaagaaattagcaccacttcttttc |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
32851568 |
aaaccatcaagaaattagcaccacttcttttc |
32851599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 88 - 619
Target Start/End: Original strand, 37174211 - 37174742
Alignment:
| Q |
88 |
atcggtatagccaaccaactcattgttttcttccttcacatacttgatcccaagcttctttgttccttggagatagcgcaaaatcctttttgctgctgca |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37174211 |
atcggtatagccaaccaactcattgttttcttccttcacatacttgatcccaagcttctttgttccttggagatagcgcaaaatcctttttgctgctgca |
37174310 |
T |
|
| Q |
188 |
aaatgaagcttacttggctcattcatgaatctagaaaccaaactaactgaatgcactatatcaggccttgtattcgtgagataaatcaaggaaccaacga |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37174311 |
aaatgaagcttacttggctcattcatgaatctagaaaccaaactaactgaatgcactatatctggccttgtattcgtgagataaatcaaggaaccaacga |
37174410 |
T |
|
| Q |
288 |
ggcttctgtaggcttttggatctgccttttctgaaccatcattcagctgcaacttttcatttaaggccattggggttgagactggtttgcagctctccaa |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37174411 |
ggcttctgtaggcttttggatctgccttttctgcaccatcattcagctgcaacttttcatttaaggccattggggttgagactggtttgcagctctccaa |
37174510 |
T |
|
| Q |
388 |
tctgaactttttaagcaaatcatgaatgtatttttcttgtgtgataaaaatctcgccttttatttgcttcacttgaattccaagaaagtatttcattaat |
487 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37174511 |
tctgaactatttaagcaaatcatgaatgtatttttcctgtgtgataaaaatctcgccttttgtttgcttcacttgaattccaagaaagtatttcattaat |
37174610 |
T |
|
| Q |
488 |
ccaaggtctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgcataaattaaatcatcaacatagagac |
587 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37174611 |
ccaagatctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgcataaattaaatcatcaacatagagac |
37174710 |
T |
|
| Q |
588 |
aaaccatcaagaaattagcaccacttcttttc |
619 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
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| T |
37174711 |
aaaccatcaagaaattaacaccacttcttttc |
37174742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 32528302 - 32528246
Alignment:
| Q |
464 |
attccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcatt |
520 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
32528302 |
attccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatt |
32528246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 461 - 619
Target Start/End: Original strand, 20737931 - 20738089
Alignment:
| Q |
461 |
tgaattccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctg |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
20737931 |
tgaattccaagaaagtatttcattaatccaacatctgtcatctcatattctttcatcattgctttcttgaatgactgcaccatatcatgatttgttcctg |
20738030 |
T |
|
| Q |
561 |
cataaattaaatcatcaacatagagacaaaccatcaagaaattagcaccacttcttttc |
619 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20738031 |
cataaattaaatcatcaacatagaaacaaaccatcaagaaattagcaccacttcttttc |
20738089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 7907285 - 7907217
Alignment:
| Q |
354 |
ccattggggttgagactggtttgcagctctccaatctgaactttttaagcaaatcatgaatgtattttt |
422 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||||||| | |||||||| |||||||||||||||||| |
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|
| T |
7907285 |
ccattggggtttagaatggtttgcaactctccaatctaatatttttaagacaatcatgaatgtattttt |
7907217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 363 - 615
Target Start/End: Complemental strand, 18397601 - 18397357
Alignment:
| Q |
363 |
ttgagactggtttgcagctctccaatctgaactttttaagcaaatcatgaatgtatttttcttgtgtgataaaaatctcgccttttatttgcttcacttg |
462 |
Q |
| |
|
|||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||||| |
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|
| T |
18397601 |
ttgagactagtttgcaattctccaatttgaattttttaagcaaatcatgaatgtatttttcttgcgtgataaaaatatctcctttcgtttgtttcacttg |
18397502 |
T |
|
| Q |
463 |
aattccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgca |
562 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| ||| ||||||||||||||||||| | ||||||||| || || |||||||||| | |||||| |||||| |
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|
| T |
18397501 |
aattccgagaaagtacttcatcaatccaagatctatcatctcatattctttcatgactgcttcctttaatgattgcaccatattaggatttgctcctgc- |
18397403 |
T |
|
| Q |
563 |
taaattaaatcatcaacatagagacaaaccatcaagaaattagcaccacttct |
615 |
Q |
| |
|
|||||| || |||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
18397402 |
-------tatcatcgacgtagagacaaatcatcaagaatttagcaccatttct |
18397357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 18397693 - 18397616
Alignment:
| Q |
206 |
tcattcatgaatctagaaaccaaactaactgaatgcactatatcaggccttgtattcgtgagataaatcaaggaaccaac |
285 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
18397693 |
tcattcatgaatctggaaaccaa--ttactgaatgcactataattggccttgttgtaatgagataaatcaaggaaccaac |
18397616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 19 - 135
Alignment:
| Q |
88 |
atcggtatagccaaccaactcattgttttcttccttcacatacttgatcccaagcttctttgttccttggagatagcgcaaaatcctttttgctgctgca |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| |
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|
| T |
19 |
atcggtatagccaaccaactcattgttttcttcctttacatacttgatcccaagcttctttgttccttggagatagtgaaaaatcctctttgctgctgca |
118 |
T |
|
| Q |
188 |
aaatgaagcttacttgg |
204 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
119 |
aaatgaagcttacttgg |
135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 28394089 - 28394033
Alignment:
| Q |
464 |
attccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcatt |
520 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
28394089 |
attccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatt |
28394033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 520
Target Start/End: Original strand, 6832006 - 6832062
Alignment:
| Q |
464 |
attccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcatt |
520 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
6832006 |
attccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatt |
6832062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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