View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_92 (Length: 288)
Name: NF0925_low_92
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 7622835 - 7622727
Alignment:
| Q |
97 |
aaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622835 |
aaagagacattaagattattccctccatcaccattactattgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
7622736 |
T |
|
| Q |
197 |
tagcctatg |
205 |
Q |
| |
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||| ||||| |
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| T |
7622735 |
tagtctatg |
7622727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 7627386 - 7627278
Alignment:
| Q |
97 |
aaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627386 |
aaagagacattaagattattccctccatcaccattactattgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
7627287 |
T |
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| Q |
197 |
tagcctatg |
205 |
Q |
| |
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||| ||||| |
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| T |
7627286 |
tagtctatg |
7627278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 7634522 - 7634424
Alignment:
| Q |
97 |
aaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaact |
195 |
Q |
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|
||||||||| | |||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7634522 |
aaagagacaatgagattatttccaccatcaccattactagtaccaagagaaacaatagaaaattgtaacatagatggttatgagattaaaccaaaaact |
7634424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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