View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_95 (Length: 286)
Name: NF0925_low_95
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 42968553 - 42968297
Alignment:
| Q |
30 |
gagggaactttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgactgttatgtgcttttttcaacagttggagat |
129 |
Q |
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| T |
42968553 |
gagggaactttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgattgttatgtgcttttttcaacagttggagat |
42968454 |
T |
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| Q |
130 |
ggttgcatgacagaaaagaacagctttattagcagatatgctcaatcatccatgcttgggttgggtgggtgctccatggattgt-----gacaattcact |
224 |
Q |
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| T |
42968453 |
ggttgcatgacaggaaagaacagctttattagcagatatgctcaaccatccatgcttgggttgggtgggtgctccatggattgtgacatgacaattcact |
42968354 |
T |
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| Q |
225 |
agttccacagtgtatggtattggacataaaactgaatgtctcaaggcctttgcttct |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42968353 |
agttccacagtgtatggtattggacataaaactgaatgtctcaaggcctttgtttct |
42968297 |
T |
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