View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_99 (Length: 280)
Name: NF0925_low_99
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 77 - 264
Target Start/End: Original strand, 42827180 - 42827374
Alignment:
| Q |
77 |
gctttgtcgctgctttgtaaagagaatttggaaccatcttcgccttcgaactccattcagaattctttagaaatatttggcggtgaaaagtaataaccta |
176 |
Q |
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| T |
42827180 |
gctttgtcgctgctttgtaaagagaatttggaaccatcttcgccttcgaactccattcagaattctttagaaatatttggcggtgaaaagtaataaccta |
42827279 |
T |
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| Q |
177 |
gcaccgttaattctaaagaaa--atatatatattaatgacttaaatatgtaaatggt-----taagttcgcgcatttttggtttggtgcctgcaa |
264 |
Q |
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| T |
42827280 |
gcaccgttaattctaaagaaaatatatatatattaatgacttaaatatgtaaacggttcttgtaagttcgcgcatttttggtttggtccctgcaa |
42827374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
| Q |
30 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
70 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
| Q |
30 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
70 |
Q |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaaca |
46424194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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