View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0926_high_1 (Length: 849)

Name: NF0926_high_1
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0926_high_1
NF0926_high_1
[»] chr2 (2 HSPs)
chr2 (30-463)||(41094489-41094921)
chr2 (534-804)||(41094992-41095262)


Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 30 - 463
Target Start/End: Original strand, 41094489 - 41094921
Alignment:
Q  30 caatttagaggggcgatctaaagttgactcacaagatgacgtggcgaacatacttcgccttttaattaggggtgatttctatatttgcctctgaatatgc 129  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  41094489 caatttagaggggcgatctaacgt-gactcacaagatgacgtggcgaacatacttcgcctttcaattagggatgatttctatatttgcctgtgaatatgc 41094587  T
Q  130 atattacaatagcatgtactcttgtcgagcagatactatagggtgaatattgaggaatctaggagaatggaggggaaggccgtatgtgctctttttaggg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094588 atattacaatagcatgtactcttgtcgagcagatactatagggtgagtattgaggaatctaggagaatggaggggaaggccgtatgtgctctttttaggg 41094687  T
Q  230 tagagtggctttgggattttatttgagagttatcgtcatgattagctgtttgacttctctactagggcatacatgctccaccgtgtaccattttggtaga 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094688 tagagtggctttgggattttatttgagagttatcgtcatgattagctgtttgacttctctactagggcatacatgctccaccgtgtaccattttggtaga 41094787  T
Q  330 caagatccacaaatcttccatatgccaaatatctactgttgtttaggaatttgtcaaattgcatagatattcttaggagatggtgcaaacatgagatgag 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094788 caagatccacaaatcttccatatgccaaatatctactgttgtttaggaatttgtcaaattgcatagatattcttaggagatggtgcaaacatgagatgag 41094887  T
Q  430 atagctcagaggatgcatgcatgaaacttgtacg 463  Q
    ||||||||||||||||||||||||||||||||||    
T  41094888 atagctcagaggatgcatgcatgaaacttgtacg 41094921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 534 - 804
Target Start/End: Original strand, 41094992 - 41095262
Alignment:
Q  534 cagtgatggatttacgaatattttctaaatagtttgtaatcaagtagattcagacattgacaaatcaatggtagcctctagtatttcagtggaagtataa 633  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094992 cagtggtggatttacgaatattttctaaatagtttgtaatcaagtagattcagacattgacaaatcaatggtagcctctagtatttcagtggaagtataa 41095091  T
Q  634 acattggaatctcaaagttgatgaatattggtccatgatgcatgttgatacgtacctacacagatattttatggtgtctatttgagagttacaagcattg 733  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41095092 acattggaatctcaaagttgatgaatattggtccatgatgcatgttgatacgtacctacacagatattttatggtgtttatttgagagttacaagcattg 41095191  T
Q  734 cattccatatgacaagatatctctatgtaggatttctaataaatgtagcacacagtagatctctggattag 804  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41095192 cattccatatgacaagatatctctatgtaggatttctaataaatgtagcacacagtagatctctggattag 41095262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University