View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_high_5 (Length: 516)
Name: NF0926_high_5
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 29 - 367
Target Start/End: Complemental strand, 48660250 - 48659909
Alignment:
| Q |
29 |
aaattgaaagagacccattattgattaaagggctaaggacaaaagaaagttacctttgatgaagattttggttgaagaaggcatattacattcgacagaa |
128 |
Q |
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| T |
48660250 |
aaattgaaagagacccattattgattaaagggctaaggacaaaagaaagttacctttgatgaagattttggttgaagaaggcatattacattcgacagaa |
48660151 |
T |
|
| Q |
129 |
gattcagaggagttggagcaaaaccatggagaaggtgcatagcgagtggaggtag---aaattgaaagtgaaagagttggaaatgagatttccgacactg |
225 |
Q |
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| T |
48660150 |
gattcagaggaggtggagcaaaacgatggagaaggtgcatagcgagtggaggtagtagaaattgaaagtgaaagagttggaaatgagatttccgatacgg |
48660051 |
T |
|
| Q |
226 |
attgtttcttcaaattcccagacagatgaaggaatacaatttggggtttgcatatagtactactaccaacaacaagtgccattagattttgaacacaaca |
325 |
Q |
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| T |
48660050 |
attgtttcttcaaattcccagacagatgaaggaatccaatttggggtttgcatatagtactactaccaacaacaagtgccattagattttgaacacaaca |
48659951 |
T |
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| Q |
326 |
ctttcactatgtcaaatgataaaagataatgtgaaagtgcaa |
367 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||| |
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| T |
48659950 |
ctttcactatgtcaaatgataaaagagaatgtgcaagtgcaa |
48659909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 48659272 - 48659239
Alignment:
| Q |
383 |
aagttttgcttttaatctacttctacttctatct |
416 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
48659272 |
aagttttgcttttaatctacttctacttctatct |
48659239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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