View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_1 (Length: 1252)
Name: NF0926_low_1
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 695; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 382 - 1171
Target Start/End: Original strand, 45666256 - 45667047
Alignment:
| Q |
382 |
attgtcatcgccaatggctaaacatttctggcttttcattgcaataggacttgttatcatcaacttggtttatggtcaacaacatcacttcttcaatgaa |
481 |
Q |
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| T |
45666256 |
attgtcatcgccaatggctaaacttttctggcttttcattgcaataggacttgttatcatcaacttggtttatggtcaacaacatcacttcttcaatgaa |
45666355 |
T |
|
| Q |
482 |
accgaagaactctttctgttagaggctcatgaacatgcagcatcctttcttgaggagggtaatggaaatcctcttctcgtaggattcacccttatccaca |
581 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| |
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| T |
45666356 |
actgaagaactctttctgttagaggctcatgaacatgcagcatcctttcttgaggagggtaatggaaatcctcttctcgtaggactcacccttgttcaca |
45666455 |
T |
|
| Q |
582 |
atgcagctgctaaaggagcaggtactatactagtactagtactacctacaaacaatacagcacctttctcctcctttcctctctaacattaaatattttt |
681 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45666456 |
atgcagctgctaaaggagcaggtactatactagtactagtactacctacaaacaatacagcacctttctcctcctttcctctc-aacattaaatattttt |
45666554 |
T |
|
| Q |
682 |
t-gtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtat |
780 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666555 |
ttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtat |
45666654 |
T |
|
| Q |
781 |
ttctacaccaaataatagtattaaggttgacgagtctttcttttcttttcgt---acttcaatagcannnnnnngtgaatttgttggctgattcccattt |
877 |
Q |
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| T |
45666655 |
ttctacaccaaataatagtattaaggttgacgagtctttcttttcttttcgtcgtactttaatagcatttttttgtgaattttttggctgattcccattt |
45666754 |
T |
|
| Q |
878 |
tttgcaacatacatatatgccatggcatatataattaactgaaaatatttagaaataattaaagttttaggatttctaactgtcatcatgtgttggtcaa |
977 |
Q |
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| T |
45666755 |
tt-gtaacatgcatatatgccatggcatatataattaactgaaaatatttagaaataattaaagttttaggatttctaactgtcatcatgtgttggtcaa |
45666853 |
T |
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| Q |
978 |
gctactttcccttttttgctgtaaaaaagttatagtgatactaaagagaaaatactctgtcagggaggtggatggtgtaacaatgtcagatcatgtgttt |
1077 |
Q |
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| T |
45666854 |
gctactttcccttttttgctgtaaaaaagttatagtgatactaaagagaaaatactctgtcagggaggtggatggtgtaacaatgtcagatcatgtgttt |
45666953 |
T |
|
| Q |
1078 |
atcgcaagaaaacacggcatggatcatcattatacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
1171 |
Q |
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| T |
45666954 |
atcgcaagaaaacacggcgtggatcatcattatacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
45667047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 7e-80
Query Start/End: Original strand, 92 - 316
Target Start/End: Original strand, 45666012 - 45666240
Alignment:
| Q |
92 |
agttataccctttaaatatgatatggtggtgatttgatagaaatagatagataaagaaaagnnnnnnncaatattgaaaagtttggaagattccaaacgt |
191 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45666012 |
agttatactctttaaatatgatatggtggtgatttgatagaaatagatagataaagaaaagaaaaaaacaatattgaaaagtttggaagattccaaacgt |
45666111 |
T |
|
| Q |
192 |
gccgtgataataataataaaacttgaaagaagcccgcccggtgccacnnnnnnnctttgccttatatat-----ctttgtacctctttccttaatcacct |
286 |
Q |
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| T |
45666112 |
gccgtgataataataataaaacttgaaagaagcccgcccggtgccactttttttctttgccttatatatctttactttgtacctc-ttccttaatcacct |
45666210 |
T |
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| Q |
287 |
cctaaatttcctttgttcacgttaatatag |
316 |
Q |
| |
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|||||||||||||||||||| ||||||||| |
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| T |
45666211 |
cctaaatttcctttgttcacattaatatag |
45666240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 680 - 780
Target Start/End: Complemental strand, 37973790 - 37973690
Alignment:
| Q |
680 |
tttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggta |
779 |
Q |
| |
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||||||| | ||||| ||||||||||||||||| |||| ||| ||||| | | ||||| ||||| || ||| |||| ||||||||||||||||||||| |
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| T |
37973790 |
tttgtttttggcagtctgcttggatggaacattgcctgcttatcattttgatcacggatacggatccggtgcaaacagctggcttgttaatttagaggta |
37973691 |
T |
|
| Q |
780 |
t |
780 |
Q |
| |
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| |
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| T |
37973690 |
t |
37973690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1109 - 1171
Target Start/End: Original strand, 38257767 - 38257829
Alignment:
| Q |
1109 |
atacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
1171 |
Q |
| |
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|||||||||||| | |||||||||||||||||| | || ||||||||||||||||| ||||| |
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| T |
38257767 |
atacatggaaaatcaaataccattcacaggaatattgagcaataaacctgaagaaaacccagg |
38257829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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