View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0926_low_10 (Length: 489)

Name: NF0926_low_10
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0926_low_10
NF0926_low_10
[»] chr5 (3 HSPs)
chr5 (58-386)||(7958491-7958820)
chr5 (64-389)||(11992725-11993052)
chr5 (441-482)||(11992635-11992676)
[»] chr2 (4 HSPs)
chr2 (58-386)||(10422841-10423171)
chr2 (274-383)||(20480578-20480687)
chr2 (146-218)||(20481156-20481228)
chr2 (447-487)||(10423195-10423235)
[»] chr4 (5 HSPs)
chr4 (65-390)||(27432633-27432960)
chr4 (56-247)||(7855696-7855886)
chr4 (244-324)||(9243359-9243439)
chr4 (259-320)||(13961173-13961234)
chr4 (429-487)||(27432998-27433056)
[»] chr7 (11 HSPs)
chr7 (93-323)||(49003867-49004098)
chr7 (56-322)||(8270950-8271214)
chr7 (62-210)||(11671350-11671498)
chr7 (256-324)||(11669737-11669805)
chr7 (56-167)||(7629471-7629582)
chr7 (56-115)||(8650635-8650694)
chr7 (299-390)||(15089760-15089851)
chr7 (143-218)||(8650547-8650622)
chr7 (429-487)||(8271334-8271392)
chr7 (353-390)||(8271255-8271292)
chr7 (439-482)||(11669615-11669658)
[»] chr3 (5 HSPs)
chr3 (56-388)||(18192962-18193292)
chr3 (56-296)||(19277622-19277851)
chr3 (56-213)||(21086514-21086671)
chr3 (244-324)||(27082066-27082146)
chr3 (339-390)||(27080924-27080975)
[»] scaffold0753 (1 HSPs)
scaffold0753 (244-324)||(3563-3643)
[»] chr1 (3 HSPs)
chr1 (441-482)||(2015917-2015958)
chr1 (56-115)||(2015194-2015253)
chr1 (155-213)||(2015278-2015336)
[»] scaffold0008 (1 HSPs)
scaffold0008 (254-311)||(53496-53553)
[»] chr6 (1 HSPs)
chr6 (274-322)||(20471471-20471519)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 58 - 386
Target Start/End: Complemental strand, 7958820 - 7958491
Alignment:
Q  58 taccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatcaat 157  Q
    |||| |||||||||||||||||||  |||||| | |||||||||  ||||||||||||||||||||||||||| ||||||| ||||||  ||||||||||    
T  7958820 taccgccaaatagaatcaaacatcggcaattacataagagatcaggagagaatatagaaatgagaagaattttagtggatggacattgcagttgatcaat 7958721  T
Q  158 gaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccaccttatttgaggaacaataagttgggaaaatcatctaagt 257  Q
    ||||| ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||   ||||    
T  7958720 gaaaagaaaataatctttgatatatccgttttattatattagagtttaaaaattaaatcaccttaattgaggaacaataagttgagaaaatcactaaagt 7958621  T
Q  258 gaaaaatggaaagaagaaatggtcg-aaaattaagtgagttcatactcgtatgaagaagttaattgctnnnnnnnntggaactaacaaagtttaaaccat 356  Q
    ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||        | |||  ||| ||||||||||| |    
T  7958620 gaaaaatggaaagaaaaaatggtcgaaaaattaagtgagtttatactcgtatggagaagttaattgctaaaaaaaatagaatgaacgaagtttaaaccgt 7958521  T
Q  357 gttatattataagagaagtgcttgtcaatt 386  Q
    ||||||||||| | ||||||||| ||||||    
T  7958520 gttatattataggggaagtgcttttcaatt 7958491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 64 - 389
Target Start/End: Complemental strand, 11993052 - 11992725
Alignment:
Q  64 caaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatcaatgaaaat 163  Q
    |||||||||||||||||   |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||| | |||||   |||||||| ||||     
T  11993052 caaatagaatcaaacattggcaattataaaagagatcaaaagataatattgaaatgagaagaatgttggtggatggagattgtttatgatcaataaaaag 11992953  T
Q  164 aaaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccaccttatttgaggaacaataagttggg-aaaatcatctaagtgaaaa 262  Q
     |||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||||  |||||||||||||| ||||| ||||||| |||||| ||||    
T  11992952 gaaataatcttcgatgtatccgttttatcacattagagtttaaaaattaaaccaccttgcttgaggaacaataaattgggtaaaatcacctaagtaaaaa 11992853  T
Q  263 atggaaagaagaaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaattgct-nnnnnnnntggaactaacaaagtttaaaccatgttat 361  Q
     |  |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||         ||||| |||||||||||||||| | |||     
T  11992852 ctaaaaagaaaaaatgatcgaaaattaagtgagttcatactcgtatgaagaagttaattgctcaagaaaaatggaattaacaaagtttaaaccgtattaa 11992753  T
Q  362 attataagagaagtgcttgtcaatttga 389  Q
    ||||||||  ||||||||||||||||||    
T  11992752 attataaggcaagtgcttgtcaatttga 11992725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 11992676 - 11992635
Alignment:
Q  441 ttgtgttatttaagaagaccttaaggggggttagtataattt 482  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||    
T  11992676 ttgtgttttttaagaagaccttaagggaggttagtgtaattt 11992635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 58 - 386
Target Start/End: Original strand, 10422841 - 10423171
Alignment:
Q  58 taccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatcaat 157  Q
    ||||||||||||||||||||||||  |||||| | |||||||||  |||||| |||||||||||||||||||||||||||| ||||||  ||||||||||    
T  10422841 taccaccaaatagaatcaaacatcggcaattacataagagatcaggagagaacatagaaatgagaagaattttggtggatggacattgcagttgatcaat 10422940  T
Q  158 gaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccaccttatttgaggaacaataagttgggaaaatcatctaagt 257  Q
    ||||| |||||||| || |||||||||| ||||||| |||||||||||||||| ||| ||||||  |||||||||||||||||| ||||||||   ||||    
T  10422941 gaaaagaaaataatatttgatatatccgttttattatattagagtttaaaaattaaatcaccttgattgaggaacaataagttgagaaaatcactaaagt 10423040  T
Q  258 gaaaaatggaaagaagaaatggtcg-aaaattaagtgagttcatactcgtatgaagaagtt-aattgctnnnnnnnntggaactaacaaagtttaaacca 355  Q
    ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||        | ||| |||| ||||||||| |     
T  10423041 gaaaaatggaaagaaaaaatggtcgaaaaattaagtgagtttatactcgtatggagaagttaaattgctaaaaaaaatagaattaacgaagtttaaaacg 10423140  T
Q  356 tgttatattataagagaagtgcttgtcaatt 386  Q
    |||||||||||| | ||||||||||||||||    
T  10423141 tgttatattataggggaagtgcttgtcaatt 10423171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 383
Target Start/End: Complemental strand, 20480687 - 20480578
Alignment:
Q  274 aaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaattgctnnnnnnnntggaactaacaaagtttaaaccatgttatattataagagaa 373  Q
    ||||||| | |||||||| |||||||||||||||| |||||||||||||||        ||||| |||||| | ||||||| ||||| |||||||  |||    
T  20480687 aaatggttgcaaattaagggagttcatactcgtataaagaagttaattgctaaaaaaaatggaattaacaaggcttaaaccgtgttaaattataacggaa 20480588  T
Q  374 gtgcttgtca 383  Q
    | ||||||||    
T  20480587 gagcttgtca 20480578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 20481228 - 20481156
Alignment:
Q  146 tggttgatcaatgaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccac 218  Q
    |||||||  ||||||||| |||||||||| |||||| |   ||||||| |||||||||||||||| |||||||    
T  20481228 tggttgactaatgaaaatgaaataatctttgatatacctcttttattaaattagagtttaaaaattaaaccac 20481156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 487
Target Start/End: Original strand, 10423195 - 10423235
Alignment:
Q  447 tatttaagaagaccttaaggggggttagtataatttaccca 487  Q
    |||||||||||| |||||||| ||||| |||||||||||||    
T  10423195 tatttaagaagatcttaagggaggttattataatttaccca 10423235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 65 - 390
Target Start/End: Original strand, 27432633 - 27432960
Alignment:
Q  65 aaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatcaatgaaaata 164  Q
    |||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||||   |||| || |||| ||||||||||| |||||||||||      
T  27432633 aaatagaatcaaacatcggcaattacagaagagattaaaagagaatatagaaatgagaattttttttgttgatggacattgtggttaatcaatgaaaaag 27432732  T
Q  165 aaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccaccttatttgaggaacaataagttgggaaaa-tcatctaagtgaaaaa 263  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||   | ||||||||||||||||||||| ||| | ||||||||||    
T  27432733 aaataatattcgatatatccgttttattactttagagtttaaaaattaaaccaccttgactaaggaacaataagttgggaaaattcaccaaagtgaaaaa 27432832  T
Q  264 tggaaagaagaaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaattgct-nnnnnnnntggaactaacaaagtttaaaccatgttata 362  Q
    | ||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||         ||||| ||| |||||||||||  |||||||    
T  27432833 tagaaagaaaaaaaggtcaaaaactaagtgagttcatactcgtatgaagaagttaattgctcaaaaaaaatggaattaataaagtttaaactgtgttata 27432932  T
Q  363 ttataagagaagtgcttgtcaatttgat 390  Q
    ||||| | || |||||||||||||||||    
T  27432933 ttatatgggaggtgcttgtcaatttgat 27432960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 56 - 247
Target Start/End: Complemental strand, 7855886 - 7855696
Alignment:
Q  56 tttaccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatca 155  Q
    |||||||||||||||||  ||||||| ||| ||| | |||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||    
T  7855886 tttaccaccaaatagaactaaacatcgacagttacataagagatcaaaagagaatatagaaatgagaagaa-tttgatggatggacattatggttgatca 7855788  T
Q  156 atgaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccaccttatttgaggaacaataagttgggaaaa 247  Q
    | |||||  ||||||||||| ||  ||||| ||||||||||||||||||||| || ||||||| ||   ||| |||||||||||||| ||||    
T  7855787 acgaaaaagaaataatcttctattaatccgttttattacattagagtttaaagattaaaccactttgaatgatgaacaataagttggaaaaa 7855696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 9243359 - 9243439
Alignment:
Q  244 aaaatcatctaagtgaaaaatggaaagaagaaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaattgct 324  Q
    ||||||| | ||||| ||||| ||||||| || |||| |||||||||| ||||||||||||||||||| ||||||||||||    
T  9243359 aaaatcaacaaagtgtaaaatcgaaagaaaaagtggttgaaaattaagagagttcatactcgtatgaaaaagttaattgct 9243439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 13961173 - 13961234
Alignment:
Q  259 aaaaatggaaagaagaaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaat 320  Q
    |||||||| || || ||||||| |||||||||  |||||||||||||||| |||||||||||    
T  13961173 aaaaatgggaataaaaaatggttgaaaattaaaggagttcatactcgtataaagaagttaat 13961234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 487
Target Start/End: Original strand, 27432998 - 27433056
Alignment:
Q  429 tagagcgggcgtttgtgttatttaagaagaccttaaggggggttagtataatttaccca 487  Q
    |||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||| ||||    
T  27432998 tagaacgggtgtttgtgttatttaagaaaaccttacgggaggttagtgtaatttgccca 27433056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 93 - 323
Target Start/End: Complemental strand, 49004098 - 49003867
Alignment:
Q  93 aagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatcaatgaaaataaaataatcttcgatatatccgctttatt 192  Q
    ||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| ||||  | |||||||| |||||||| | ||||||    
T  49004098 aagagatcaaaagagaataaataaatgagaagaattttggtggaaggacattgtggttgatcaataaaaacgatataatctttgatatatctgttttatt 49003999  T
Q  193 acattagagtttaaaaataaaaccaccttatttgaggaacaataagttggg-aaaatcatctaagtgaaaaatggaaagaagaaatggtcgaaaattaag 291  Q
    |||||| ||||||||||| |||| ||| |    |||||||||||||||||| ||||| | ||||||||||||||||||||| ||||| ||  ||||||||    
T  49003998 acattaaagtttaaaaattaaactaccatggccgaggaacaataagttgggaaaaattacctaagtgaaaaatggaaagaaaaaatgatccgaaattaag 49003899  T
Q  292 tgagttcatactcgtatgaagaagttaattgc 323  Q
    ||||||||||||| ||||||||||||||||||    
T  49003898 tgagttcatactcttatgaagaagttaattgc 49003867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 56 - 322
Target Start/End: Original strand, 8270950 - 8271214
Alignment:
Q  56 tttaccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatca 155  Q
    |||||||||||||| ||||||||||| |||      ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  8270950 tttaccaccaaataaaatcaaacatcgaca------gaacagatcaaaagagaatatagagatgagaagaattttggtggatggacattgtggttgatca 8271043  T
Q  156 atgaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccaccttatttgaggaacaataagttgggaaa-atcatcta 254  Q
    |||||||  |||||| ||| |||||||||| ||||||||||||| |||||||||  ||||||||||   | || ||||||||||||||||| || | |||    
T  8271044 atgaaaaggaaataa-ctttgatatatccgttttattacattagtgtttaaaaactaaaccaccttgact-agaaacaataagttgggaaagattaccta 8271141  T
Q  255 agtgaaaaatggaaagaagaaatggtcga-----aaattaagtgag-ttcatactcgtatgaagaagttaattg 322  Q
    ||||||||||||||| || ||||||||||     |||||||||| | || ||||||||||||||||||||||||    
T  8271142 agtgaaaaatggaaa-aaaaaatggtcgaaaattaaattaagtgggtttaatactcgtatgaagaagttaattg 8271214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 11671498 - 11671350
Alignment:
Q  62 accaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatcaatgaaa 161  Q
    |||||||||||| |||| ||  |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||||    
T  11671498 accaaatagaataaaacgtcggcaattatataagagatcaaaagagaatatagaaaagagaagatttttggtggatgggcattgtggttgatcaatgaaa 11671399  T
Q  162 ataaaataatcttcgatatatccgctttattacattagagtttaaaaat 210  Q
    |  |||||||||| |||||||  | ||||||||||||||||||||||||    
T  11671398 aagaaataatctttgatatatatgttttattacattagagtttaaaaat 11671350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 11669805 - 11669737
Alignment:
Q  256 gtgaaaaatggaaagaagaaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaattgct 324  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  11669805 gtgaaaaatggaaagaaaaaatggtcgaatatgaagtgagttcatactcgtatgaagaagttaattgct 11669737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 7629582 - 7629471
Alignment:
Q  56 tttaccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatca 155  Q
    |||||||||||||||||||||||| | ||||| | ||| || |  ||||||||||||||||||| ||||  ||||| |||||| ||||||||||||| |     
T  7629582 tttaccaccaaatagaatcaaacaccgacaataacagaggatagtaaaagagaatatagaaatgggaagggttttgatggatggacattgtggttgaccg 7629483  T
Q  156 atgaaaataaaa 167  Q
    ||||||| ||||    
T  7629482 atgaaaaaaaaa 7629471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 8650694 - 8650635
Alignment:
Q  56 tttaccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatataga 115  Q
    ||||||| |||||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  8650694 tttaccaacaaatagaatcaaacatcaacaattaaagaagagactaaaagagaatataga 8650635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 15089760 - 15089851
Alignment:
Q  299 atactcgtatgaagaagttaattgctnnnnnnnntggaactaacaaagtttaaaccatgttatattataagagaagtgcttgtcaatttgat 390  Q
    |||||| |||||||||||||||||||        ||||||||||||||||| |||| ||||||| |||||  ||||||||||||||||||||    
T  15089760 atactcatatgaagaagttaattgctcaataaaatggaactaacaaagtttgaaccgtgttataatataaatgaagtgcttgtcaatttgat 15089851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 8650622 - 8650547
Alignment:
Q  143 ttgtggttgatcaatgaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccac 218  Q
    ||||||||||  ||| ||||  |||||||| |||||||||| | ||||||| |||||||||||||||| |||||||    
T  8650622 ttgtggttgactaataaaaaggaaataatcatcgatatatctgttttattaaattagagtttaaaaattaaaccac 8650547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 487
Target Start/End: Original strand, 8271334 - 8271392
Alignment:
Q  429 tagagcgggcgtttgtgttatttaagaagaccttaaggggggttagtataatttaccca 487  Q
    ||||||||| |||| |||||||||||||| ||||||||| ||||||| |||||| ||||    
T  8271334 tagagcgggtgtttatgttatttaagaagcccttaagggaggttagtgtaatttgccca 8271392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 8271255 - 8271292
Alignment:
Q  353 ccatgttatattataagagaagtgcttgtcaatttgat 390  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  8271255 ccatgttattttataagagaagtgcttgtcaatttgat 8271292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Complemental strand, 11669658 - 11669615
Alignment:
Q  439 gtttgtgttatttaagaagaccttaaggggggttagtataattt 482  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||    
T  11669658 gtttgtgttatttaagaagaccttatgggaggttagtgtaattt 11669615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 56 - 388
Target Start/End: Original strand, 18192962 - 18193292
Alignment:
Q  56 tttaccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatca 155  Q
    ||||||| |||||| ||  |||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  18192962 tttaccatcaaatacaacaaaacatcggcaattacagaagagatcaaaagagaatatggaaatgagaagaattttggtggatggacattgtggttgatca 18193061  T
Q  156 atgaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccaccttatttgaggaacaataagttgg---gaaaatcatc 252  Q
    |||||||  ||||||| |||||||||  || |||||||||||||||||| ||||| |||| |||||   |||| |||||||| ||||    ||||||| |    
T  18193062 atgaaaaggaaataattttcgatatactcgttttattacattagagtttgaaaattaaacaaccttgactgagaaacaataatttggaaaaaaaatcacc 18193161  T
Q  253 taagtgaaaaatggaaagaagaaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaattgctnnnnnnnntggaactaacaaagtttaaa 352  Q
    ||| |||||||| |||  || |||| ||| |||||||||| ||  || ||||||||||||||||||||||||        ||||| | ||||  ||||||    
T  18193162 taaatgaaaaatagaagaaaaaaatagtcaaaaattaagttagaccaaactcgtatgaagaagttaattgctaaaaaaaatggaattgacaa--tttaaa 18193259  T
Q  353 ccatgttatattataagagaagtgcttgtcaatttg 388  Q
    ||   |||||||||||| ||||||||||||||||||    
T  18193260 cc---ttatattataagggaagtgcttgtcaatttg 18193292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 56 - 296
Target Start/End: Complemental strand, 19277851 - 19277622
Alignment:
Q  56 tttaccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatca 155  Q
    |||||||||||| ||||||||||||| |||||||          || ||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||    
T  19277851 tttaccaccaaaaagaatcaaacatcgacaatta----------cagaagagaatataaaaatgagaa-aattttgatggatggacattgtggttgatca 19277763  T
Q  156 atgaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaaaccaccttatttgaggaacaataagttg-ggaaaatcatcta 254  Q
    |||||||  |||||||||||||||||||   ||||||| |||||||||||||||| |||||||| |   ||||||||||||||||| | ||||||| | |    
T  19277762 atgaaaaggaaataatcttcgatatatctattttattatattagagtttaaaaattaaaccaccgtgactgaggaacaataagttgagaaaaatca-cca 19277664  T
Q  255 agtgaaaaatggaaagaagaaatggtcgaaaattaagtgagt 296  Q
    ||||||||||| |||||| |||| || ||||||||| |||||    
T  19277663 agtgaaaaatgaaaagaaaaaattgttgaaaattaaatgagt 19277622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 213
Target Start/End: Complemental strand, 21086671 - 21086514
Alignment:
Q  56 tttaccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatatagaaatgagaagaattttggtggatgaacattgtggttgatca 155  Q
    |||| ||| ||||||||||||||||| ||||||| | |||||| |||||||||||||| ||||| ||||| |||| ||||||| ||  ||| ||||| ||    
T  21086671 tttagcactaaatagaatcaaacatccacaattacaaaagagagcaaaagagaatataaaaatgggaagagttttcgtggatggacggtgttgttgacca 21086572  T
Q  156 atgaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaa 213  Q
    |||||||  ||||||| ||||||||||  | |||||||||||||||||||||| ||||    
T  21086571 atgaaaaggaaataattttcgatatatatgttttattacattagagtttaaaattaaa 21086514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 27082146 - 27082066
Alignment:
Q  244 aaaatcatctaagtgaaaaatggaaagaagaaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaattgct 324  Q
    ||||||| |||||||| ||||||| |||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  27082146 aaaatcacctaagtgacaaatggatagaaaaaatgattgaaaattaagcgagttcatactcgtatgaagaagttaattgct 27082066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 27080975 - 27080924
Alignment:
Q  339 taacaaagtttaaaccatgttatattataagagaagtgcttgtcaatttgat 390  Q
    |||||||||||||||| | ||||||||||||  |||||||||| ||||||||    
T  27080975 taacaaagtttaaaccctattatattataaggaaagtgcttgttaatttgat 27080924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 3643 - 3563
Alignment:
Q  244 aaaatcatctaagtgaaaaatggaaagaagaaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaattgct 324  Q
    ||||||| | ||||| ||||||||||||| || ||||  ||||||||| || |||||||||||||||| ||||||||||||    
T  3643 aaaatcaacaaagtggaaaatggaaagaaaaagtggttaaaaattaagagatttcatactcgtatgaaaaagttaattgct 3563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 2015917 - 2015958
Alignment:
Q  441 ttgtgttatttaagaagaccttaaggggggttagtataattt 482  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  2015917 ttgtgttatttaagaagaccttaagggaggttagtgtaattt 2015958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 2015194 - 2015253
Alignment:
Q  56 tttaccaccaaatagaatcaaacatcaacaattatagaagagatcaaaagagaatataga 115  Q
    ||||||| |||||||||||||||||| |||| || ||||||||  |||||| ||||||||    
T  2015194 tttaccaacaaatagaatcaaacatcgacaaataaagaagagactaaaagataatataga 2015253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 2015278 - 2015336
Alignment:
Q  155 aatgaaaataaaataatcttcgatatatccgctttattacattagagtttaaaaataaa 213  Q
    ||||||||  |||||||||||||||||||   ||||||| |||||||||||||| ||||    
T  2015278 aatgaaaaggaaataatcttcgatatatctattttattaaattagagtttaaaattaaa 2015336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 53496 - 53553
Alignment:
Q  254 aagtgaaaaatggaaagaagaaatggtcgaaaattaagtgagttcatactcgtatgaa 311  Q
    ||||||||||||  ||||| |||||||||||||||||   |||||||||| |||||||    
T  53496 aagtgaaaaatgataagaaaaaatggtcgaaaattaaagaagttcatacttgtatgaa 53553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 20471471 - 20471519
Alignment:
Q  274 aaatggtcgaaaattaagtgagttcatactcgtatgaagaagttaattg 322  Q
    ||||||| || ||||||| ||||||||| |||||| |||||||||||||    
T  20471471 aaatggttgagaattaagggagttcatagtcgtataaagaagttaattg 20471519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 702 times since January 2019
Visitors: 6705