View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_16 (Length: 383)
Name: NF0926_low_16
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 25 - 383
Target Start/End: Original strand, 43790439 - 43790797
Alignment:
| Q |
25 |
catcacttgatttacaaatgaatagtttcagtggccatatacctgaagagatacaaggctgtgaaaaccttcaaaattttgcagcatcaaacaacatgct |
124 |
Q |
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| T |
43790439 |
catcacttgatttacaaatgaatagttttagtggccatatacctgaagagatacaaggctgtgaaaaccttcaaaattttgcagcatcaaacaacatgct |
43790538 |
T |
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| Q |
125 |
tgaaggaaacattccttcctctatagggtcccttaaatcattgaaaattattaatcttgctaataacactctatctggaccgattccttcatcgttgagt |
224 |
Q |
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| T |
43790539 |
tgaaggaaacattccttcctctatagggtcccttaaatcattgaaaattattaatcttgctaataacactctatctggaccaattccttcatcgttgagt |
43790638 |
T |
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| Q |
225 |
tatctttctaacttgacatacctgaattttcttggaaacaaactaaatggtgaaattccatacgagcttaatagtttgatccaattgcagaaactagact |
324 |
Q |
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| T |
43790639 |
tatctttctaacttgacatacctgaattttcttggaaacaaactaaatggtgaaattccatatgagcttaatagtttgatccaattgcagaaactagact |
43790738 |
T |
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| Q |
325 |
tgtctggaaacaacttttctggatcaatacctctccttaatttcaaattgaagagtctt |
383 |
Q |
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| T |
43790739 |
tgtctggaaacaacttttctggatcaatacctctccttaattccaaattgaagagtctt |
43790797 |
T |
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