View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_19 (Length: 347)
Name: NF0926_low_19
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_19 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 19883 - 20055
Alignment:
| Q |
43 |
accctattaatggatccactgttgaaccaaataaaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccagcagagttatcgatttca |
142 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19883 |
accctattaatggatctactgatgaaccaaataaaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccaacagagttatcgatttca |
19982 |
T |
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| Q |
143 |
tacatacaattgcagcagaattataaataagacgaatccgagttcataaaaacaatgaatttagagacaaaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19983 |
tacatacaattgcagcagaattataaataagacgaattcgagttcataaaaacaatgaatttagagacaaaat |
20055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 14981081 - 14980906
Alignment:
| Q |
40 |
atgaccctattaatggatccactgttgaaccaaataaaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccagcagagttatcgatt |
139 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14981081 |
atgaccctattaatggatccacggatgaaccaaataaaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccaacagagttatcgatt |
14980982 |
T |
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| Q |
140 |
tcatacatacaattgcagcagaattataaataagacgaatccgagttcataaaaacaatgaatttagagacaaaat |
215 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14980981 |
tcatacgtacaattgcagtagaattataaataagacgaatttgagttcataaaaacaatgaatttagagacaaaat |
14980906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 15410557 - 15410382
Alignment:
| Q |
40 |
atgaccctattaatggatccactgttgaaccaaataaaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccagcagagttatcgatt |
139 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15410557 |
atgaccctattaatggatccacggatgaaccaaataaaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccaacagagttatcgatt |
15410458 |
T |
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| Q |
140 |
tcatacatacaattgcagcagaattataaataagacgaatccgagttcataaaaacaatgaatttagagacaaaat |
215 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15410457 |
tcatacgtacaattgcagtagaattataaataagacgaatttgagttcataaaaacaatgaatttagagacaaaat |
15410382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 26013923 - 26014098
Alignment:
| Q |
40 |
atgaccctattaatggatccactgttgaaccaaataaaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccagcagagttatcgatt |
139 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26013923 |
atgaccctattaatggatccacggatgaaccaaataaaacaaaaattcaagattatgtacaagttgttacgatgagtattaaccaacagagttatcgatt |
26014022 |
T |
|
| Q |
140 |
tcatacatacaattgcagcagaattataaataagacgaatccgagttcataaaaacaatgaatttagagacaaaat |
215 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
26014023 |
tcatacgtacaattgcagcaaaattataaataagacgaattcgagttcataaaaacaatgaatttagagacaaaat |
26014098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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