View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_24 (Length: 325)
Name: NF0926_low_24
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_24 |
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| [»] chr4 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 88 - 325
Target Start/End: Original strand, 48658995 - 48659231
Alignment:
| Q |
88 |
ggtgaaaagttgtagagaatgtgaaatgataattggataaaaaattgtataatagggtgtagcgcgttacccaatgtataacaggtttgatgacatcatt |
187 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658995 |
ggtgaaaagttgtagagaaaatgaaatgatagttggataaaaaattatataatagggtgtagcgcgttacccaatgtataacaggtttgatgacatcatt |
48659094 |
T |
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| Q |
188 |
gaggtnnnnnnntggtttttattagcacaaaagtccattataacctttaagcggtaaagaaaataaaatggtgaaaatttgggcatgagtagataagtat |
287 |
Q |
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| T |
48659095 |
gaggtaaaaag-tggtttttattagcacaaaagtccattataacctttaagttgtgaagaaaataaaatggtgaaaatttgggtataaatagataagtat |
48659193 |
T |
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| Q |
288 |
ttttagtagtaacttgcgatcatatattgtaagtagat |
325 |
Q |
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|||| |||||||||||| || ||||||||||||||||| |
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| T |
48659194 |
tttttgtagtaacttgctattatatattgtaagtagat |
48659231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 37723896 - 37723792
Alignment:
| Q |
88 |
ggtgaaaagttgtagagaatgtgaaatgataattggataaaaaattgtataatagggtgtagcgcgttacccaatgtataacaggtttgatgacatcatt |
187 |
Q |
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||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37723896 |
ggtgaaaagttgtagagaaagtgaaatgatagttggatacaaaattgtataatagggtgtagcgcgttacccaatgtataacaggtttgatgacatcatt |
37723797 |
T |
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| Q |
188 |
gaggt |
192 |
Q |
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||||| |
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| T |
37723796 |
gaggt |
37723792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 45172004 - 45172126
Alignment:
| Q |
200 |
tggtttttattagcacaaaagtccattataacctttaagcggtaaagaaaataaaatggtgaaaatttgggcatgagtagataagtatttttagtagtaa |
299 |
Q |
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| T |
45172004 |
tggtttttattagcacaaaagtccattataacctttgagttgtgaagaaaataaaatggtgaaaatttgggcatgggtagttaagtatttttggtagtaa |
45172103 |
T |
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| Q |
300 |
cttgcgatcatatattgtaagta |
322 |
Q |
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||||| ||||||||||||||||| |
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| T |
45172104 |
cttgctatcatatattgtaagta |
45172126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 45171854 - 45171979
Alignment:
| Q |
200 |
tggtttttattagcacaaaagtccattataacctttaagcggtaaagaaaataaaatggtgaaaatttgggcatgagtagataagtatttttagtagtaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
45171854 |
tggtttttattagcacaaaagtccattataacctttgaattgtgaagaaaataaaatggtgaaaatttgggcatgggtagttaagtatttttggtagtaa |
45171953 |
T |
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| Q |
300 |
cttgcgatcatatattgtaagtagat |
325 |
Q |
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|||| |||||||||||||||||||| |
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| T |
45171954 |
attgctatcatatattgtaagtagat |
45171979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 37723651 - 37723570
Alignment:
| Q |
244 |
aagaaaataaaatggtgaaaatttgggcatgagtagataagtatttttagtagtaacttgcgatcatatattgtaagtagat |
325 |
Q |
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| T |
37723651 |
aagaaaataaaatggtgaaaatttaggcatggataattaagtatttttggtagtaacttactatcatatattgtaagtagat |
37723570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 88 - 324
Target Start/End: Complemental strand, 54340626 - 54340391
Alignment:
| Q |
88 |
ggtgaaaagttgtagagaatgtgaaatgataattggataaaaaattgtataatagggtgtagcgcgttacccaatgtataacaggtttgatgacatcatt |
187 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
54340626 |
ggtgaaaagttgtagagaaagtgaaatgatagttggataaaaaattgtataatatggtgtagcgcgttacccaatttataacaggtttgatgacttcatt |
54340527 |
T |
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| Q |
188 |
gaggtnnnnnnntggtttttattagcacaaaagtccattataacctttaagcggtaaagaaaataaaatggtgaaaatttgggcatgagtagataagtat |
287 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||| || || |||||||||||||||| ||||||| |||||| ||| ||||||| |
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| T |
54340526 |
gaggt-aaaaagtggtttttattagcacaaaagtccattataatctttgagttgtgaagaaaataaaatggtaaaaatttaggcatggatagttaagtat |
54340428 |
T |
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| Q |
288 |
ttttagtagtaacttgcgatcatatattgtaagtaga |
324 |
Q |
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|||| |||||||||||| |||||| |||||||||||| |
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| T |
54340427 |
ttttggtagtaacttgctatcatacattgtaagtaga |
54340391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 140 - 325
Target Start/End: Original strand, 34440227 - 34440411
Alignment:
| Q |
140 |
tagggtgtagcgcgttacccaatgtataacaggtttgatgacatcattgaggtnnnnnnntggtttttattagcacaaaagtccattataacctttaagc |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
34440227 |
tagggtgtagcgcgttacccaatgtataacaggtttgatgacatcattgaggtaaaaag-tggtttttattagcacaaaagtccattataacctttgagt |
34440325 |
T |
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| Q |
240 |
ggtaaagaaaataaaatggtgaaaatttgggcatgagtagataagtatttttagtagtaacttgcgatcatatattgtaagtagat |
325 |
Q |
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| T |
34440326 |
tgtgaagaaaataaaatggtgaaaatttgggcatggataattaagtatttttagtagtaacttgctatcatatattgtaagtagat |
34440411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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