View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_25 (Length: 296)
Name: NF0926_low_25
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 24352668 - 24352480
Alignment:
| Q |
52 |
agaaacaaaggtgaatattaatgggtattttcaatagaatggtaattaaagcttagtaaattcgttcaaataaaggatttgtcccccttatacacgtgat |
151 |
Q |
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| T |
24352668 |
agaaacaaaggtgaatattaatgggtatgttcaatagaatggtaattaaagcttagtaaattctttcaagtaaaggatttgtcccccttatataagtgat |
24352569 |
T |
|
| Q |
152 |
cagaggttcggttcttgactcatgcgtatg--nnnnnnnnntttgattgaaagaggagaattcacattaatttttgcctcacaggttct |
238 |
Q |
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| T |
24352568 |
cagaggttcggttcttgattcatgtgtatgaagaaaaaaaaaatgattgaaagaggagaattcacattaatttatgccccacgggttct |
24352480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 24310326 - 24310198
Alignment:
| Q |
52 |
agaaacaaaggtgaatattaatgggtattttcaatagaatggtaattaaagcttagtaaattcgttcaaataaaggatttgtcccccttatacacgtgat |
151 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| | ||||| |
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| T |
24310326 |
agaaacaaaggtgaatattaatgggtatgttcaatagaatggtaattaaagcttagtaaattctttcaagtaaaggatttgt-ccccttatataagtgat |
24310228 |
T |
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| Q |
152 |
cagaggttcggttcttgactcatgcgtatg |
181 |
Q |
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| T |
24310227 |
cagaggttcggttcttgattcatgtgtatg |
24310198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 24310185 - 24310151
Alignment:
| Q |
193 |
tgattgaaagaggagaattcacattaatttttgcc |
227 |
Q |
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| T |
24310185 |
tgattgaaagaggagaattcacattaatttatgcc |
24310151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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