View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0926_low_28 (Length: 287)
Name: NF0926_low_28
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 47210372 - 47210191
Alignment:
| Q |
54 |
agctgttgcaaaaggcaatctcttgaatttcaacactactcatagaaaagacaagatggaatcttcaatatatgcaagctccattgccaagacaaaatct |
153 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47210372 |
agctgtagcaaaaggcaatctcttggatttcaacactactcgtagaaaatacaagatggaatcttcaatctatgcaagctccattgccaagacaaaatct |
47210273 |
T |
|
| Q |
154 |
tgatttcatccaccatgtcatccacccccttgttactttcattgaagattccatcattttcatttctaatctttcatctcac |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47210272 |
tgatttcatccaccatgtcatccacccccttgttactatcattgaagattccatcattttcatttctaatctttcatatcac |
47210191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 42193536 - 42193479
Alignment:
| Q |
91 |
actcatagaaaagacaagatggaatcttcaatatatgcaagctccattgccaagacaa |
148 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| | || |||||||||||||||||||| |
|
|
| T |
42193536 |
actcatagaagagacacgatggaattttcaacctttgtaagctccattgccaagacaa |
42193479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 8170574 - 8170723
Alignment:
| Q |
63 |
aaaaggcaatctcttgaatttcaacactactcatagaaaagacaagatggaatcttcaatatatgcaagctccattgccaagacaaaatcttgatttcat |
162 |
Q |
| |
|
||||| ||||| |||| ||| |||| | |||| ||||| || |||| |||||||||||| ||| ||||||||||||||||||||||| ||| || |||| |
|
|
| T |
8170574 |
aaaagacaatcccttggattccaactccactcgtagaagaggcaagttggaatcttcaacctattcaagctccattgccaagacaaaaacttaatatcat |
8170673 |
T |
|
| Q |
163 |
ccaccatgtcatccacccccttgttactttcattgaagattccatcattt |
212 |
Q |
| |
|
| || || || ||||||||||| || | || |||||||||| ||||||| |
|
|
| T |
8170674 |
caacgatatcctccacccccttactaatatctttgaagattctatcattt |
8170723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 20748552 - 20748667
Alignment:
| Q |
69 |
caatctcttgaatttcaacactactcatagaaaagacaagatggaatcttcaatatatgcaagctccattgccaagacaaaatcttgatttcatccacca |
168 |
Q |
| |
|
||||| |||| ||| |||||| || |||| || | |||||||||| |||||||| ||| ||||||| ||||||||||||| | |||||| ||||| || | |
|
|
| T |
20748552 |
caatcccttggattccaacaccacacataaaacaaacaagatggattcttcaatttattcaagctctattgccaagacaataccttgatatcatcaacta |
20748651 |
T |
|
| Q |
169 |
tgtcatccaccccctt |
184 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
20748652 |
tatcatcgaccccctt |
20748667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 19861987 - 19861943
Alignment:
| Q |
104 |
acaagatggaatcttcaatatatgcaagctccattgccaagacaa |
148 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
19861987 |
acaagacggaatcttcaatctattcaagctccattgccatgacaa |
19861943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1359 times since January 2019
Visitors: 6712