View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_30 (Length: 266)
Name: NF0926_low_30
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_30 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 266
Target Start/End: Original strand, 26304267 - 26304505
Alignment:
| Q |
28 |
acagctgcatatgcaatttaaagccataattctaagctcatttaagataaaatttctcacctggctccattatgttcattttgatcatgataattccaag |
127 |
Q |
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| T |
26304267 |
acagctgcatacgcaatttaaagccataattctaagctcatttacgataaaatttctcacctggctccattatgttcattttgatcatgataattccaag |
26304366 |
T |
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| Q |
128 |
gagtcccaaagcacctagctgatcctcctagcttgtctcctttacaaatctcagcccttttttctggcatattaataagctccttagaggcagttttctg |
227 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||| |
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| T |
26304367 |
gagtcccaaaacacctagctgatcctcctagtttgtctcctttacaaatctcagcccttttttctggcatattagtaagctccttcggggcaattttctt |
26304466 |
T |
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| Q |
228 |
agcagagttcatagagacaaaagcagcatcatttgttgc |
266 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
26304467 |
agcagggttcatagagacaaaagcagcatcatttgttgc |
26304505 |
T |
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