View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_35 (Length: 243)
Name: NF0926_low_35
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 7527857 - 7527715
Alignment:
| Q |
4 |
tcttccgtgttgaagtaatcgagcaagtcatcggcatcatcaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgct |
103 |
Q |
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| T |
7527857 |
tcttccgtgttgaagtaatcgagaaagtcatcggcatcatcaaaagcatctttgagattttccagccatagttgaacttgatggttgttggtgccctgct |
7527758 |
T |
|
| Q |
104 |
gctcctctgcatccaaaaccacagccttgatctcagacatatt |
146 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7527757 |
gctcttctgcatccaaaaccacagccttgatctcagacatatt |
7527715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 7481739 - 7481596
Alignment:
| Q |
3 |
gtcttccgtgttgaagtaatcgagcaagtcatcggcatcatcaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgc |
102 |
Q |
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|||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||| |
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| T |
7481739 |
gtcttcagtgttaaagtcatcgagcaagtcatcggcatcatcaagagcatctttgagcttttccagccagagttgaacttgatggttgttggttccctgc |
7481640 |
T |
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| Q |
103 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
146 |
Q |
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| T |
7481639 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
7481596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 7129399 - 7129542
Alignment:
| Q |
3 |
gtcttccgtgttgaagtaatcgagcaagtcatcggcatcatcaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgc |
102 |
Q |
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| T |
7129399 |
gtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttggctccctgc |
7129498 |
T |
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| Q |
103 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
146 |
Q |
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| T |
7129499 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
7129542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 7494141 - 7493998
Alignment:
| Q |
3 |
gtcttccgtgttgaagtaatcgagcaagtcatcggcatcatcaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgc |
102 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||||||| ||||||||||| ||| ||| |
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| T |
7494141 |
gtcttccgtgttaaagtcatcgagcaagtcatcggcatcatcaagagcatctttcagcttttccaaccacagttgaacttgatggttgttggttccttgc |
7494042 |
T |
|
| Q |
103 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
146 |
Q |
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| T |
7494041 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
7493998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 7722673 - 7722816
Alignment:
| Q |
3 |
gtcttccgtgttgaagtaatcgagcaagtcatcggcatcatcaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgc |
102 |
Q |
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|||||| ||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||| |
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| T |
7722673 |
gtcttcagtgttaaagtcatcaagcacgtcatcggcatcatcaagagcatctttgagattttcaagccagagttgaacttgatggttgttggttccctgc |
7722772 |
T |
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| Q |
103 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
146 |
Q |
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| T |
7722773 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
7722816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 7519808 - 7519665
Alignment:
| Q |
3 |
gtcttccgtgttgaagtaatcgagcaagtcatcggcatcatcaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgc |
102 |
Q |
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|||||| |||||||||| ||| ||||||| |||||||||||||||||||||||| || ||||||| ||| |||||||||| ||||||||||| ||| ||| |
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| T |
7519808 |
gtcttcggtgttgaagtcatcaagcaagttatcggcatcatcaagagcatctttcagcttttccaaccacagttgaacttgatggttgttggttccttgc |
7519709 |
T |
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| Q |
103 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
146 |
Q |
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| T |
7519708 |
tgctcctctgcatccaaaaccacagccttgatctcagacatatt |
7519665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 7714384 - 7714522
Alignment:
| Q |
1 |
aggtcttccgtgttgaagtaatcgagcaagtcatcggcatcatcaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccct |
100 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7714384 |
aggtcttccgtgttgaagtaattgagaaagtcatcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccct |
7714483 |
T |
|
| Q |
101 |
gctgctcctctgcatccaaaaccacagccttgatctcagacatatt |
146 |
Q |
| |
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|||||| |||||||| |||||||||||||||| ||||||| |
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| T |
7714484 |
gctgct-------atccaaaatcacagccttgatctcatacatatt |
7714522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 7506352 - 7506306
Alignment:
| Q |
100 |
tgctgctcctctgcatccaaaaccacagccttgatctcagacatatt |
146 |
Q |
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|
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| T |
7506352 |
tgctgctcctctgcatccaaaaccacagccttgatctcagacatatt |
7506306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 7506405 - 7506351
Alignment:
| Q |
3 |
gtcttccgtgttgaagtaatcgagcaagtcatcggcatcatcaagagcatctttg |
57 |
Q |
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|||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
7506405 |
gtcttcggtgttgaagtcatcgagcaagtcatcagcatcatcaagagcatctttg |
7506351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 16750718 - 16750836
Alignment:
| Q |
25 |
agcaagtcatcggcatcatcaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgc---tgctcctctgcatccaaaa |
121 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||| || |||| |||||||| || | || |||||||| |||||| || || ||||||||||||| |
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| T |
16750718 |
agcaagtcatcagcatcatcaagagtatctttgagcttctccacccatagtttaattctatagttgttggggccctgctgttgttcttctgcatccaaaa |
16750817 |
T |
|
| Q |
122 |
ccacagccttgatctcaga |
140 |
Q |
| |
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|| |||||||||||||||| |
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| T |
16750818 |
ccgcagccttgatctcaga |
16750836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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