View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_4 (Length: 663)
Name: NF0926_low_4
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 367
Target Start/End: Complemental strand, 1465370 - 1465034
Alignment:
| Q |
30 |
gttttacgtatttaggataatcgagattgttaggtcgagattgaaccgtttttatttcatgttcagcannnnnnnnnnnnnaaaaaatgttttgaaatat |
129 |
Q |
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| T |
1465370 |
gttttatgcatttaggataatcgagattgttaggtcgagattgaaccgtttttatttcatgttcagtattttttattttttaaaaaatgttttgaaatat |
1465271 |
T |
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| Q |
130 |
gtctgctgttcaacaacgttatcctaaatgcgtgaattcgtcaacatcactgtcccattctgtattgttgtgacnnnnnnnntagtaaagatgctagaag |
229 |
Q |
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| T |
1465270 |
gtctgttgttcaacaacgttatccttaatgcgtgaattcgtcaacatcactgtcccattctgtattgttgtgacaaaaaaa-tagtaaagatgctagaag |
1465172 |
T |
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| Q |
230 |
aaaataaagaaatatgctgagtaattatctaagagagaaagaaaagggatggaaagacatgaaaaaacaaggtttgatatagaaaatctaaaatgtaaag |
329 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1465171 |
aaaataaagaaatatgttgagtaattatctaagagagaaagaaaagggatggaaagacatgaaaaaacaaggtttgatatagaaaatctaaaatgtaaag |
1465072 |
T |
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| Q |
330 |
atcttatgttaacaacttaatcctattaattttcaata |
367 |
Q |
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| T |
1465071 |
atcttatgttaacaacttgatcctattaattttcaata |
1465034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 469 - 543
Target Start/End: Complemental strand, 1464928 - 1464854
Alignment:
| Q |
469 |
tcttgttagatactaatatcttatctaagcttagatgagaaagagaaaaaaccaataaaatagcttaggtctctg |
543 |
Q |
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| T |
1464928 |
tcttgttagatactaatatcttatctaagcttagatgagaaagagaaaaaaccaataaaatagcttaggtctctg |
1464854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 277 - 367
Target Start/End: Complemental strand, 26792767 - 26792673
Alignment:
| Q |
277 |
gatggaaagaca-tgaaaaaacaaggtttgatatagaaaatct-aaaatgtaaagatct--tatgttaacaacttaatcctattaattttcaata |
367 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| || | ||||||||||| |
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| T |
26792767 |
gatggaaagacaatgaaaaaacaaggtttgatataggaaatctaaaaatgtaaagatcttatatgttaacaacttaatgctgtaaattttcaata |
26792673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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