View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_5 (Length: 640)
Name: NF0926_low_5
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 30 - 605
Target Start/End: Complemental strand, 7782218 - 7781641
Alignment:
| Q |
30 |
gaggggagtttattgttatgtcaaaaggagaactcagagagagctcccacattagatgaagagcaatctctgtgttgtcttcatgacagaacagttagct |
129 |
Q |
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| T |
7782218 |
gaggggagtttattgttatgtcaaaaggagaactcagagagagctcccacattagatgaagagcaatctctgtgttgtcttcatgacagaacagttagct |
7782119 |
T |
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| Q |
130 |
tcttcatactttgtcggagaggatcttctacgcaggtg--atctactagaccgatgaagtcataagaagaatggtgattgacttcatgagtttggaggat |
227 |
Q |
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| T |
7782118 |
tcttcatactttgtcggagaggatcttctacgcaggtgggatctactagactgatgaagtcataagaagaatggtgattgacttcatgagtttggaggtt |
7782019 |
T |
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| Q |
228 |
actatccactcagctgtaactttctgcgcttggaaaaactataaagtaataagatatatatcgaatttgagtttcaagtttaattgaagtaagtttgttt |
327 |
Q |
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| T |
7782018 |
actatccactcagctgtaactttctgcgtttggaaaaactataaggtaataagatatatatcgaatttgagtttcaagtttaattgaagtgagtttgttt |
7781919 |
T |
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| Q |
328 |
aattcaaagcacctttgcttttagtatccagcaaatggaacttgatttagtctacttggtattattcttcaaactattcgactggtctttcttgaagtgc |
427 |
Q |
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| T |
7781918 |
aattcaaagcacctttgcttttagtatccagcaaatggaacttgatttagtctacttggtattattcttcaaactattcgactgatctttcttgaagtga |
7781819 |
T |
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| Q |
428 |
aaaaagatttcgctgaaaaagttccataaactgggtaatgatgtctttttccatttgcagtatgttgcttatttgatttgcttttagctattatttgtca |
527 |
Q |
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| T |
7781818 |
aaaaagatttcgctgaaaaagttccataaactgggtaatgatgtctttttccatttgcagtatgttacttatttcatttgcttttagctgttatttgtca |
7781719 |
T |
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| Q |
528 |
tagattctacttctgactattcgattctccagtatttaggatcttgaggtttgagcatcatagatgtgtatcaatttc |
605 |
Q |
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| T |
7781718 |
tgcattctacttctgactattagattctcaagtatttaggatcttgaggtttgagcatcatagatgtgtatcaatttc |
7781641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 5524340 - 5524381
Alignment:
| Q |
172 |
actagaccgatgaagtcataagaagaatggtgattgacttca |
213 |
Q |
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| T |
5524340 |
actagactgatgaagtcataagaagagtagtgattgacttca |
5524381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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