View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0926_low_9 (Length: 501)
Name: NF0926_low_9
Description: NF0926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0926_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 30 - 490
Target Start/End: Complemental strand, 40451896 - 40451436
Alignment:
| Q |
30 |
gtccaccatcttccataccttttcttgggcaatcaagcatatctcatcaatgaatcattacacgaaaagatgaaaaatctcatcaatgaatcatcatcac |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40451896 |
gtccaccatcttccataccttttcttgggcaatcaagcatatctcatcaatgaatcattacacgaaaagatgaaaaatctcatcaatgaatcatcatcac |
40451797 |
T |
|
| Q |
130 |
tcaaaatggagaaaaatattagtgacttacccgataacattcttcaccatattctttcatttctctccaccaaggatgctgtcaaaacatccatattagc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40451796 |
tcaaaatggagaaaaatattagtgacttacccgataacattcttcaccatattctttcatttctctccaccaaggatgctgtcaaaacatccatattagc |
40451697 |
T |
|
| Q |
230 |
aacaaagtggaggtacttgtggacccaattatccgtctatgattttcatattattagtccttctcattctcaaaatcaaaactcagcaacaccaaattct |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40451696 |
aacaaagtggaggtacttgtggacccaattatccgtctatgattttcatattattagtccttctcattctcaaaatcaaaactcagcaacagcaaattct |
40451597 |
T |
|
| Q |
330 |
cttttaggtttagtcaccacactacttcacaaatctaatgtagaaatacaaagcctcgccattaaaataacacctcgagttatttttgatgcacacaatc |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
40451596 |
cttttaggtttagtcaccacactacttcacaaatctaatgtagaaatacaaagcctcgccattgaaataacacctcgagttatttgggatgcacacaatc |
40451497 |
T |
|
| Q |
430 |
atttttctcgactatcagttactcttgttgcacgcaaactcacttctttactatcttctct |
490 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
40451496 |
atttttctcgactatcagttactcttgatgcacgcaaacttacttctttactatcttctct |
40451436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 40275855 - 40275904
Alignment:
| Q |
38 |
tcttccataccttttcttgggcaatcaagcatatctcatcaatgaatcat |
87 |
Q |
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||||||||||||| | ||||| | | |||||||||||||||||||||||| |
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| T |
40275855 |
tcttccataccttgttttggggagtaaagcatatctcatcaatgaatcat |
40275904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 31219190 - 31219136
Alignment:
| Q |
222 |
atattagcaacaaagtggaggtacttgtggacccaattatccgtctatgattttc |
276 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |
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| T |
31219190 |
atattagcaacaaagtggagatacttgtggacccaattacccgtctttgattttc |
31219136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 14729462 - 14729362
Alignment:
| Q |
177 |
catattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtctatgattttc |
276 |
Q |
| |
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||||||||||| || ||| | || || |||||||| | ||| ||||||||||| |||||||||| ||||||||||| || |||||| ||| |||||||| |
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| T |
14729462 |
catattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggacacatttatccatctttgattttc |
14729363 |
T |
|
| Q |
277 |
a |
277 |
Q |
| |
|
| |
|
|
| T |
14729362 |
a |
14729362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 14741001 - 14740901
Alignment:
| Q |
167 |
cattcttcaccatattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtc |
266 |
Q |
| |
|
||||||||| |||||||||| || ||||| ||||| || || || | ||| || |||||| || |||||||||| ||||||||||| |||||||| ||| |
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| T |
14741001 |
cattcttcattatattctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaattatctgtc |
14740902 |
T |
|
| Q |
267 |
t |
267 |
Q |
| |
|
| |
|
|
| T |
14740901 |
t |
14740901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 17594025 - 17594125
Alignment:
| Q |
177 |
catattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtctatgattttc |
276 |
Q |
| |
|
||||||||||| || ||| | || || |||||||| | ||| ||||||||||| |||||||||| ||||||||||| || |||||| ||| |||||||| |
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| T |
17594025 |
catattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggacacatttatccatctttgattttc |
17594124 |
T |
|
| Q |
277 |
a |
277 |
Q |
| |
|
| |
|
|
| T |
17594125 |
a |
17594125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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