View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_high_18 (Length: 259)
Name: NF0927_high_18
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 38 - 243
Target Start/End: Complemental strand, 39998122 - 39997917
Alignment:
| Q |
38 |
gagggccctcctaagcaaaatttactttaagcaatggccttcaaaagattcgatttccactgtccaagtgtctctcttggattcctggaaattggtcatt |
137 |
Q |
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| T |
39998122 |
gagggccctcctaagcaaaatttactttaagcaatggccttcaaaagattcgatttccactgtccaagtgtctctcttggattcctggaaattggtcatt |
39998023 |
T |
|
| Q |
138 |
ctctttagtacatgatactcctttctaaagtaattgatttgctatgtgcattattaagatgacactagaaaaatggtagtatataagatgttgttaaatt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39998022 |
ctctttagtacatgatactcctttctaaagtaattgatttgctatgtgcattattaagatgacactagaaaaatggtagtatataagatgttgttaaatt |
39997923 |
T |
|
| Q |
238 |
catctc |
243 |
Q |
| |
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|||||| |
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| T |
39997922 |
catctc |
39997917 |
T |
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