View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_high_2 (Length: 565)
Name: NF0927_high_2
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 9 - 565
Target Start/End: Original strand, 31438351 - 31438907
Alignment:
| Q |
9 |
agcagagagacaggcttcaagaatgagagtggaatacctaaaatcagtcttaagacaagaagttggtttctttgacacacaaactgctggttcttcaaca |
108 |
Q |
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| T |
31438351 |
agcagagagacaggcttcaagaatgagagtggaatacctaaaatcagtcttaagacaagaagttggtttctttgacacacaaactgctggttcttcaaca |
31438450 |
T |
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| Q |
109 |
acataccaagttgtctcactcatctcctctgatgcaaatacagtccaatctgccttgtgtgagaaggtttgtcacaaacttctcaaaatccaaaaaatca |
208 |
Q |
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| T |
31438451 |
acataccaagttgtctcactcatctcctctgatgcaaatacagtccaatctgccttgtgtgagaaggtttgtcacaaacttctcaaaatccaaaaaatca |
31438550 |
T |
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| Q |
209 |
tgtacatttgaacacaatcgggatgattataacatatatcacgtatatttgcaaacttaaaaatcatgattactgacgttcaaatcgaggttgattacgt |
308 |
Q |
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| T |
31438551 |
tgtacgtttgaacacaatcgggatgattataatatatatcacgtatatttgcacacttaaaaatcatgattactgacgttcaaatcgaggttgattacgt |
31438650 |
T |
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| Q |
309 |
taagtgcatggttaataagttttgacaccttgtaatttttatcaactgtacaccgaacgtaattagccatatannnnnnnnnngaaaggaaaattggcca |
408 |
Q |
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| T |
31438651 |
taagtgtatggttaagaagttttgacaccttgtaatttttatcaactatacaccgaacataattagccatatattttttttttgaaaggaaaattggcca |
31438750 |
T |
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| Q |
409 |
tatatttaaacggcctcaaccatccaagttgttgtcgattttcacagtcaaatttgtgtgtcaaaatatcttttctgaaagtagatagaccttctgatca |
508 |
Q |
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| T |
31438751 |
tatatttaaacggcctcaaccatccaagttgttgtcgattttcacagtcaaatttgtgtgtcaaaatatcttttctgaaagtagatagaccttctgatca |
31438850 |
T |
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| Q |
509 |
taaacgataagttcaagtgcatcagtgacatacttcttagtatatactatatacgca |
565 |
Q |
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| T |
31438851 |
taaacgataagttcaagtgcatcagtgacatacttcttagtatatactatatacgca |
31438907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 39154136 - 39154181
Alignment:
| Q |
40 |
gaatacctaaaatcagtcttaagacaagaagttggtttctttgaca |
85 |
Q |
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| T |
39154136 |
gaatatctaaaatcaatcctaagacaagaagttggtttctttgaca |
39154181 |
T |
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