View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_high_4 (Length: 473)
Name: NF0927_high_4
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Original strand, 42742114 - 42742544
Alignment:
| Q |
12 |
atgaaccagtgtatcactttgaatttgggtaaaccttcttatataactaacaaacttgcgccaatgcttggcaatggcattttgagagccaatggccaaa |
111 |
Q |
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| T |
42742114 |
atgaaccagtgtattactttgaatttgggtaaaccttcttatataactaacaaacttgcgccaatgcttggcaatggcattttgagagccaatggccata |
42742213 |
T |
|
| Q |
112 |
gttgggcacaacagaggaaacttgttgcagctgagttcttcatggacaaagttaaggtattatgatctctcctcattgtctcacccttgtttacatattg |
211 |
Q |
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| T |
42742214 |
gttgggcacaacagaggaaacttgttgcagctgagttcttcatggacaaagttaaggtattatgatctctcctcattgtctcacccttgtttacatattg |
42742313 |
T |
|
| Q |
212 |
ttgtatttttggaatgattaatattctcaacaataatagatttttatgcaatctttgtgttatttgacttttttcaaaaacaaattcttttatacacaaa |
311 |
Q |
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| T |
42742314 |
ttgtatttttggaatgattaatattctcaactataagagatttttatgcaatcttcgtgttatttgacttttttcaaaaacaaattcttttatacacaaa |
42742413 |
T |
|
| Q |
312 |
gaacctgcatgtactataatgaacccacacactcttgacaatacctttacaaaaattacaattaaataagtttaggcacacaattaacattataattaat |
411 |
Q |
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| T |
42742414 |
gaacctgcatgtact---atgaacccacacactcttgacaatacctttacaaaaattacaattaaataagttcaggcacacaattaacattataattaat |
42742510 |
T |
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| Q |
412 |
tttaaattcttaatccattttctatatatgactt |
445 |
Q |
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| T |
42742511 |
tttaaattcttaatccattttctatatatcactt |
42742544 |
T |
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